RNA id: TU114517


Basic Information

Item Value
RNA id TU114517
length 2466
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G85026
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31261549 ~ 31264054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGTTATGCAGTTTTAATCAAGCAAACATATTCAATCAATCCTCAGTACAGGCTGGAGGTTTAGAGCAGTTTAGTAGGAGGTAAAGGGTATTACAAGCACTGCATTAATATTCCAAAGCAAATAAAAGGGTTCAGAAGGGACATGGTGCACGGGGAGGGTTCAGACACTCACTCATCAACCTGAGGCATTTTATTCTACACTGGATTAAAGGAGGACTCCAGATTTACCACCCTGATTCTGATATCTAGTCCCTCGTGTCTGTAGAGTAAAGTCTATTACCACTGACTGTAactcaaaacatgaaaaaacgaaaaacagaaaaaacagaaacacaatctCTGAATACTGAATTCACTTAGAACAGAAATCAGTGGGAAGGTCTATCTATataattctatctatctatctatctatctatctatctatctatctatctatctaattttattttgaagATAAATTAAACTGCATAACTGAAAGACTGCAGTGATTGGATGAGTTCTAGAAAGAgttttaaaatttgattttagaaagtgaaagtaactggaactacttttttgggtggaataaaacttaaaaaaggcAGTTTCCCAGACTTTTCTCATCCATTGTGATTTAATATTAATgccatccagactatgaaggaacacataaggaatcatttagtaacttaaaagtgttaaacaaaccaaccaTTTAGCATCTTTTATCTGGGGTTAAGTTGTTAACtcgtggtttctgaggctggtaactctgataactCTTGCTCTCCCTTTCctagggtggtcctgatgagagccagtttcatcataatgtttctgATAATACTTGCGACTGCACCTGAgagtattttaaaatgaattgaaatTCTTGAAAGATTTTGGATTGATTGGATTTGGTGGAAAAGTATGATCATCTGAGACATGTTTCTATGTTATTAGATCTACGATTCTACGATTCTGCCAAATTTGGTGGCTGTGGGTTGAAAAATGTGACTTTTAGAGGCATTTGAATTTTTGAGTTAAAAGTTTACAGACACTTTCCAATGCATTCCTATGGGAGAGTTTTGTCCACTTCGTATGTTTACTGTTCAAATACTTTGGgacttatatacatatacattacaTCTATAAGCTATATATAAGCACAATATTCCAGCATATATAATCCCACTGACTTCTGTTATACGTGTTTTCAGCATCAGTGCATGCCGTGTTTATCCAATCACTTtccaatgttaaaaaaaaagtatcttaatttttgtagattttttaatttactacatatttaaaaaaacaaacaaaaaaaaacacaaactttcCTTTATACTGTGTCAAACTTTTTatgatgaacggaccaaaataaattctctaaaatggtcataaaaatagaataaactcttttatgttttgtattgacttccattgaaaataagagagagatattctgttcatgtttttcagtggacagcgacaatatgctcCTCTATCTTCAGAAAAACATGTTTCAACAGGTTTCAAGTTACAGTTGGTGGTAAAGGCACATATTCTACAGATACTGAAGATCAGGTCATGAAATAACACcattcttttttaaaacacatttgaaaACAAGCAAATGGCTCAGAaactcgaaaaaaaaaaattaaaacagtgttaaaacggattaaaacagctttaaaacagatttaaaacatatttaaaacatcaatAACCAGAAAAATTTACTTTACACCAAGGTGTTCTGTGATGGGTGAGATTTACATACTGAAATTAATCCAAAATAAGAACCATAAGAGTGAATAAATAACTATTGAAGTGAGTTAGTcctcatttttcttttataaacagCGGTTCTAGATAACTCACCATGACGCGTGACAACATGTTCGCTTACATGCTTCCCGATCCTGCGGTTAAAACATTCTGACATCATCAGCGCcaccataatataataataataatataataaacactctACGACCAAAAGTAGTGACTGTATTCAACCGCCGGTTCAGGGTATCTGACACTGGTGTTCACACACCCTGGTTGCCAGGTTAAGGACACTAATATCCGCTTATGTTAGCATGTTGTATAATGATGGTTTTAACCAGCACTAGTCTggcttactttacctcacttttaTCTCAAATCCTCTTAGTGCAGCAAAAGCTCCAATCAGCATTCAGTATTAATCCAATAATGACATTACTTTTGGCCATATAGTGATTGCACTGTATGTTAGTTAGCTATCAATCAGttctacagtttaaaataaagttaaaaaataaaatcgaaACCATACAGAGTTATTAttaggacagcaacgatatgatGTCAGCAATGGTAACAGCAATGatatgatgtgttttttattaataaagtataaacTCAAGTAAACAGAACTAAGATGAACTAAGGGGGTTTTAAATTCAGCATTTGATTCCctttaatacaaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114510 lncRNA upstream 1696 31243479 ~ 31259853 (+) True G85020
TU114512 lncRNA upstream 7957 31247348 ~ 31253592 (+) True G85021
TU114482 lncRNA upstream 210523 31050827 ~ 31051026 (+) True G84998
TU114481 lncRNA upstream 210897 31050410 ~ 31050652 (+) True G84997
TU114313 lncRNA upstream 339259 30912883 ~ 30922290 (+) True G84881
TU114516 lncRNA downstream 5886 31269940 ~ 31356017 (+) True G85025
TU114527 lncRNA downstream 108477 31372531 ~ 31378051 (+) True G85036
TU114550 lncRNA downstream 243027 31507081 ~ 31508055 (+) True G85052
TU114552 lncRNA downstream 279415 31543469 ~ 31544202 (+) True G85054
TU114703 lncRNA downstream 485649 31749703 ~ 31805403 (+) False LOC103034273
XM_022673168.1 mRNA upstream 22867 31153609 ~ 31238682 (+) True znf236
XM_022673169.1 mRNA upstream 22867 31153609 ~ 31238682 (+) False znf236
XM_022673170.1 mRNA upstream 22867 31154438 ~ 31238682 (+) False znf236
XM_015600856.2 mRNA upstream 212343 31030011 ~ 31049206 (+) True tshz1
XM_007231651.3 mRNA upstream 270008 30942676 ~ 30991541 (+) True znf407
XM_007231661.3 mRNA downstream 125397 31389451 ~ 31410793 (+) True LOC103047815
XM_007230941.3 mRNA downstream 190939 31454993 ~ 31469556 (+) True pnisr
XM_007230943.3 mRNA downstream 208084 31472138 ~ 31478897 (+) True coq3
XM_007230944.3 mRNA downstream 216578 31480632 ~ 31502591 (+) True faxc
XM_007230945.3 mRNA downstream 260897 31524951 ~ 31540915 (+) True fbxl4
LOC107197844 other upstream 2182651 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 2217810 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 2219942 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 2236435 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 2261443 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 190930 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 559532 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 935129 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 935129 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 935837 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile