RNA id: TU114904


Basic Information

Item Value
RNA id TU114904
length 1073
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G85315
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32218864 ~ 32219936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGACAATGTGTAATGCTGCTATGGGAAACACAAACACGTGGTGAACGACAGTGCCTCCAGTTTCTGAACACGAGAGAGATGGATGTGTTTTTAGTGCCAGTGCCAGTTTGGACCTGCGTGTGATTGGACACAGAACAGAACGTCCACACGGGACACACGACTTCTCTGACCTAAGCTGCTGTGGATTCATATTCAACGGCGATCCGCAAACACGAACTCTGTGCAAGACGACGGAGGACGGATCGCCTGGGGCTGCGTTCCAATCGGACGAAACGGCAGGTCCTCGTTGGGAAGTgtacggaaaaaaaaaaaaacgaagaagaaaaaaaagcggAATGATATCCTGTGAGGACTCTCTGAAAGCGAGGGACAAAGTCTTACTCAAACACGACGACTGTACTAACACGCAATAGAACTGAGTGTGTAAATAATAAAGGGATATTAAACGTCGGTATATACGGAGAGATAACGGTTCAATTCCCCTTGTTGCCCAAAGAGACGAGTTTAGGAACTGCTCACTCTGCCACCGTGACCGTGGGTCTGTATATATACATGACTAATATCCCTTTCAGCTAGTACACTACATCTAATTtataaatttagagtatttcagtattctgtatttaatttcatctatttatatgtttttttttttcgtttgttattgttattgttcatCATTTCTACACCAATCTGCCTGAATCTGAGTTTTGTTCACAGCAGAAAGTCTTAAACATTCCGGAATAAAGGCCTTTATTTTTGTTAGGGGAAAGGGGGGTTtctgtgggggggggggggtggtgccGTAGACCTGCTGCCAAATTAGTGTGCTAGGAGCGAACGATTGGACCTGCGCTGACCGGTGCTGACCGCCTGACCTCGGCACCGGACGGCGTGAACcgaaagagaaaaaagtaaacAGAGCTCGATCTCTTCCCattgagaaaataaaacacacattctaTTTGTATTCAAGTGACTATTTCTcgtttgtttttcattatattttcacagtaatatatttattgttgcgttaaaagttttaattattaacaccagttttgttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114906 lncRNA upstream 42103 32176539 ~ 32176761 (+) True G85317
TU114905 lncRNA upstream 47013 32171617 ~ 32171851 (+) True G85316
TU114899 lncRNA upstream 89451 32129099 ~ 32129413 (+) True G85310
TU114893 lncRNA upstream 133120 32085203 ~ 32085744 (+) True G85304
TU114827 lncRNA upstream 172054 32041867 ~ 32046810 (+) True G85279
TU114933 lncRNA downstream 56109 32276045 ~ 32276309 (+) True G85335
TU114935 lncRNA downstream 64204 32284140 ~ 32284478 (+) True G85337
TU114936 lncRNA downstream 70444 32290380 ~ 32290622 (+) True G85338
TU114937 lncRNA downstream 72086 32292022 ~ 32292429 (+) True G85339
TU114939 lncRNA downstream 72584 32292520 ~ 32292909 (+) True G85341
XM_022673183.1 mRNA upstream 102 32199188 ~ 32218762 (+) False LOC103035447
XM_022673184.1 mRNA upstream 102 32199189 ~ 32218762 (+) False LOC103035447
XM_007230950.3 mRNA upstream 369400 31835348 ~ 31849464 (+) True kpna5
XM_007230949.3 mRNA upstream 399012 31812267 ~ 31819852 (+) True rwdd1
XM_007230948.3 mRNA upstream 414165 31801564 ~ 31804699 (+) True LOC103034273
XM_007230962.2 mRNA downstream 200196 32420132 ~ 32425312 (+) True LOC103038892
XM_007230960.3 mRNA downstream 207090 32427026 ~ 32430265 (+) True LOC103038371
XM_007230958.2 mRNA downstream 216281 32436217 ~ 32441318 (+) True LOC103037843
XM_022673187.1 mRNA downstream 509183 32729119 ~ 32923000 (+) True LOC103035585
XM_007257446.3 mRNA downstream 822909 33042845 ~ 33057697 (+) True LOC103035281
XR_002650383.1 other upstream 102 32199183 ~ 32218762 (+) True LOC103035447
XR_002650385.1 other upstream 102 32199891 ~ 32218762 (+) False LOC103035447
XR_002650384.1 other upstream 3717 32199183 ~ 32215147 (+) False LOC103035447
TU114720 other upstream 394476 31823586 ~ 31824388 (+) True G85189
XR_002650381.1 other upstream 756604 31454984 ~ 31462260 (+) False pnisr
TU114974 other downstream 216296 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other downstream 216296 32436232 ~ 32441316 (+) False LOC103037843
TU115452 other downstream 2526878 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 3101576 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 3416891 35636827 ~ 35658087 (+) True LOC111193254

Expression Profile