RNA id: TU114978


Basic Information

Item Value
RNA id TU114978
length 469
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G85371
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32444931 ~ 32469093 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAGGTAATTTAAAGCAAAAGCTCAAACACACATAAACCTATTAAACATCCATTGCCTGCACTTGGGTGTGTGTAACACACTGGATATATGAATAGGATCAGTTTGATTATTTCACTGTACATAAAACCCTGAATGCGTATCTACAGTTCTTATCGAGCCATTTGAAGTCTTGCtctgtgtCTATGGCACCGCAGTGCTGAGACAATGGAAGTTGTGGGACTTGCCCTCCCACCCAGTTGGTCCAGGAACCCAAATCACTCCCATCAGACCAAAACCAGAAACCAAAAAGTTGGCTCTGTCCAAGCCCCACCCACAAAGTCCCAGAGATACCCTCCTCCTGAGCTCGTTCTTCACCTCATTGTGGTCAGATTCAGTATGAATGTGCAGCAGACCAGCCCTGTTATCTTTCTTACAGTAGTAAAAAGCGTTCTCCCAGTTCATACGGTCCTCACTGACATGGAGGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114962 lncRNA upstream 53519 32375381 ~ 32391412 (+) True G85360
TU114939 lncRNA upstream 152022 32292520 ~ 32292909 (+) True G85341
TU114937 lncRNA upstream 152502 32292022 ~ 32292429 (+) True G85339
TU114936 lncRNA upstream 154309 32290380 ~ 32290622 (+) True G85338
TU114935 lncRNA upstream 160453 32284140 ~ 32284478 (+) True G85337
TU115050 lncRNA downstream 23067 32492160 ~ 32492439 (+) True G85418
TU115071 lncRNA downstream 76019 32545112 ~ 32545385 (+) True G85438
TU115088 lncRNA downstream 341420 32810513 ~ 32810909 (+) True G85455
TU115075 lncRNA downstream 453963 32923056 ~ 32925758 (+) True G85442
TU115094 lncRNA downstream 466145 32935238 ~ 32938633 (+) True G85461
XM_007230958.2 mRNA upstream 3613 32436217 ~ 32441318 (+) True LOC103037843
XM_007230960.3 mRNA upstream 14666 32427026 ~ 32430265 (+) True LOC103038371
XM_007230962.2 mRNA upstream 19619 32420132 ~ 32425312 (+) True LOC103038892
XM_022673183.1 mRNA upstream 226169 32199188 ~ 32218762 (+) False LOC103035447
XM_022673184.1 mRNA upstream 226169 32199189 ~ 32218762 (+) False LOC103035447
XM_022673187.1 mRNA downstream 260026 32729119 ~ 32923000 (+) True LOC103035585
XM_007257446.3 mRNA downstream 573752 33042845 ~ 33057697 (+) True LOC103035281
XM_007257287.2 mRNA downstream 592090 33061183 ~ 33071966 (+) True c9h2orf71
XM_007247681.3 mRNA downstream 1362177 33831270 ~ 33849509 (+) True slc4a1ap
XM_022673194.1 mRNA downstream 1543664 34012757 ~ 34183355 (+) True babam2
TU114974 other upstream 3615 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 3615 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 226169 32199183 ~ 32218762 (+) True LOC103035447
XR_002650385.1 other upstream 226169 32199891 ~ 32218762 (+) False LOC103035447
XR_002650384.1 other upstream 229784 32199183 ~ 32215147 (+) False LOC103035447
TU115452 other downstream 2277721 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 2852419 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 3167734 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 5129084 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 6196074 38665167 ~ 38698313 (+) True G86497

Expression Profile