RNA id: TU115050


Basic Information

Item Value
RNA id TU115050
length 280
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G85418
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32492160 ~ 32492439 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaagatggacgccgtgtcgccgttcccattcattcaatgaaaatgaagccaaaatcttccgccattttggcgattcagaaacccgagtctgcgcagtagagacaagaggagggagaaagactgtagagagacagcctactcatttaaataaacccgcccctgagggctgcctccacagagctcacacagtctgccgagccgagccgagcggAGTCCAGTCGAGCGGAGAACTTATCTGCAGCACGATAAGATTAATATTTTCATAGTAACAGTGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114986 lncRNA upstream 2247 32452690 ~ 32489913 (+) True G85377
TU114978 lncRNA upstream 23067 32444931 ~ 32469093 (+) False G85371
TU114979 lncRNA upstream 23067 32444931 ~ 32469093 (+) True G85371
TU114962 lncRNA upstream 100748 32375381 ~ 32391412 (+) True G85360
TU114939 lncRNA upstream 199251 32292520 ~ 32292909 (+) True G85341
TU115071 lncRNA downstream 52673 32545112 ~ 32545385 (+) True G85438
TU115088 lncRNA downstream 318074 32810513 ~ 32810909 (+) True G85455
TU115075 lncRNA downstream 430617 32923056 ~ 32925758 (+) True G85442
TU115094 lncRNA downstream 442799 32935238 ~ 32938633 (+) True G85461
TU115124 lncRNA downstream 552332 33044771 ~ 33045175 (+) True G85486
XM_007230958.2 mRNA upstream 50842 32436217 ~ 32441318 (+) True LOC103037843
XM_007230960.3 mRNA upstream 61895 32427026 ~ 32430265 (+) True LOC103038371
XM_007230962.2 mRNA upstream 66848 32420132 ~ 32425312 (+) True LOC103038892
XM_022673183.1 mRNA upstream 273398 32199188 ~ 32218762 (+) False LOC103035447
XM_022673187.1 mRNA downstream 236680 32729119 ~ 32923000 (+) True LOC103035585
XM_007257446.3 mRNA downstream 550406 33042845 ~ 33057697 (+) True LOC103035281
XM_007257287.2 mRNA downstream 568744 33061183 ~ 33071966 (+) True c9h2orf71
XM_007247681.3 mRNA downstream 1338831 33831270 ~ 33849509 (+) True slc4a1ap
XM_022673194.1 mRNA downstream 1520318 34012757 ~ 34183355 (+) True babam2
TU114974 other upstream 50844 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 50844 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 273398 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 2254375 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 2829073 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 3144388 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 5105738 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 6172728 38665167 ~ 38698313 (+) True G86497

Expression Profile