RNA id: TU115247


Basic Information

Item Value
RNA id TU115247
length 201
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G85588
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33852188 ~ 33852388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGGGCCCGGTTTcccaaaatcacaccttgttTATATGCTGAACTCTGGACCACAGTTTGTGACATTGCACTTTTTCTCCATCTGGTTCAGATGATTCCACACTGCAGTGGCTGAAGTCCATGAGATGATGTTCCACAGAGGGTTTATTGTATTTGCGGTAGTCTGCAGTTGGGTGGAGATACATGTGATGTCATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115232 lncRNA upstream 93428 33758533 ~ 33758760 (+) True G85576
TU115229 lncRNA upstream 106717 33744952 ~ 33745471 (+) True G85573
TU115225 lncRNA upstream 131228 33720723 ~ 33720960 (+) True G85569
TU115221 lncRNA upstream 134809 33711598 ~ 33717379 (+) True G85566
TU115222 lncRNA upstream 134809 33711598 ~ 33717379 (+) False G85566
TU115250 lncRNA downstream 1929 33854317 ~ 33953373 (+) True G85591
TU115256 lncRNA downstream 38624 33891012 ~ 33891582 (+) True G85596
TU115260 lncRNA downstream 73774 33926162 ~ 33929125 (+) True LOC111193250
XR_002650388.1 lncRNA downstream 74481 33926869 ~ 33928268 (+) False LOC111193250
TU115268 lncRNA downstream 93809 33946197 ~ 33949266 (+) False G85602
XM_007247681.3 mRNA upstream 2679 33831270 ~ 33849509 (+) True slc4a1ap
XM_007257287.2 mRNA upstream 780222 33061183 ~ 33071966 (+) True c9h2orf71
XM_007257446.3 mRNA upstream 794491 33042845 ~ 33057697 (+) True LOC103035281
XM_022673187.1 mRNA upstream 929188 32729119 ~ 32923000 (+) True LOC103035585
XM_007230958.2 mRNA upstream 1410870 32436217 ~ 32441318 (+) True LOC103037843
XM_022673194.1 mRNA downstream 160369 34012757 ~ 34183355 (+) True babam2
XM_022673193.1 mRNA downstream 160374 34012762 ~ 34183355 (+) False babam2
XM_007248446.3 mRNA downstream 360029 34212417 ~ 34226780 (+) True fosl2
XM_007248447.3 mRNA downstream 360029 34212417 ~ 34226780 (+) False fosl2
XM_022673197.1 mRNA downstream 390731 34243119 ~ 34264685 (+) True mocs1
TU114974 other upstream 1410872 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 1410872 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 1633426 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 894426 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 1469124 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 1784439 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 3745789 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 4812779 38665167 ~ 38698313 (+) True G86497

Expression Profile