RNA id: TU115268


Basic Information

Item Value
RNA id TU115268
length 471
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G85602
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33946197 ~ 33949266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaactaaggttagccctagctaacattagcggagagctagctaacgttaccagagagagaactaaggttagcggtgagctagccaACGTTACCAGAGAgcgagaactaaggttagcgaagCCCTAGCTAACGCtaccagagagagaactaaggttagcaaagctctagctagcattagtggagagctagctaacgttaccagagagagaactaaggttggCAAAGCTCTAGCTAgcattagtggagagctagctaacgctaccagagagagaactaagattagcaAAGCCCTAGCTAACTTTAgagaaagaactaaggttagcggagagctagctaacattagcggcaagttaACTATTGCTTCAGTGGAGAGAACTAacgttagcagtgagctagctaatgttaccagagagCTAGCTTATATTAggggtgagctagctaacattaccggggAGACAACTAACGTTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115260 lncRNA upstream 17072 33926162 ~ 33929125 (+) True LOC111193250
XR_002650388.1 lncRNA upstream 17929 33926869 ~ 33928268 (+) False LOC111193250
TU115256 lncRNA upstream 54615 33891012 ~ 33891582 (+) True G85596
TU115247 lncRNA upstream 93809 33852188 ~ 33852388 (+) True G85588
TU115232 lncRNA upstream 187437 33758533 ~ 33758760 (+) True G85576
XR_002650390.1 lncRNA downstream 322666 34271932 ~ 34284284 (+) False LOC111193252
TU115351 lncRNA downstream 322756 34272022 ~ 34285239 (+) False LOC111193252
TU115354 lncRNA downstream 322756 34272022 ~ 34319416 (+) True LOC111193252
TU115400 lncRNA downstream 534313 34483579 ~ 34517443 (+) True G85700
TU115410 lncRNA downstream 626581 34575847 ~ 34576218 (+) True G85710
XM_007247681.3 mRNA upstream 96688 33831270 ~ 33849509 (+) True slc4a1ap
XM_007257287.2 mRNA upstream 874231 33061183 ~ 33071966 (+) True c9h2orf71
XM_007257446.3 mRNA upstream 888500 33042845 ~ 33057697 (+) True LOC103035281
XM_022673187.1 mRNA upstream 1023197 32729119 ~ 32923000 (+) True LOC103035585
XM_007230958.2 mRNA upstream 1504879 32436217 ~ 32441318 (+) True LOC103037843
XM_022673194.1 mRNA downstream 63491 34012757 ~ 34183355 (+) True babam2
XM_022673193.1 mRNA downstream 63496 34012762 ~ 34183355 (+) False babam2
XM_007248446.3 mRNA downstream 263151 34212417 ~ 34226780 (+) True fosl2
XM_007248447.3 mRNA downstream 263151 34212417 ~ 34226780 (+) False fosl2
XM_022673197.1 mRNA downstream 293853 34243119 ~ 34264685 (+) True mocs1
TU114974 other upstream 1504881 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 1504881 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 1727435 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 797548 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 1372246 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 1687561 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 3648911 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 4715901 38665167 ~ 38698313 (+) True G86497

Expression Profile