RNA id: TU115410


Basic Information

Item Value
RNA id TU115410
length 372
lncRNA type intronic
GC content 0.47
exon number 1
gene id G85710
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34575847 ~ 34576218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcaaaagcacacctcaggcgactctgtttgtggcgtgcttgcagaaatggcttctttcgcatcactctcccatacagcttctccttgtgcaaagtgcgctgtattgttgaccgatgcacagtgacaccatctgcagcaagatgatgctgcagctctttggaggtggtctgtggattgtccttgactgttctcaccgttcttcttctctgcctttctgatatttttcttggcctgccacttctgggcttaacaagaactgtccctgtggtcttccatttccttactatgttcctcacagtggaaactgacaggttaaatctctgagacaactttttgtctccttcccctgaacaactatgttgaacaatctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115400 lncRNA upstream 58404 34483579 ~ 34517443 (+) True G85700
TU115354 lncRNA upstream 256431 34272022 ~ 34319416 (+) True LOC111193252
TU115351 lncRNA upstream 290608 34272022 ~ 34285239 (+) False LOC111193252
XR_002650390.1 lncRNA upstream 291563 34271932 ~ 34284284 (+) False LOC111193252
TU115268 lncRNA upstream 626581 33946197 ~ 33949266 (+) False G85602
TU115409 lncRNA downstream 60288 34636506 ~ 34637200 (+) True G85709
TU115571 lncRNA downstream 619698 35195916 ~ 35196276 (+) True G85834
TU115572 lncRNA downstream 635389 35211607 ~ 35218417 (+) True G85835
TU115585 lncRNA downstream 755016 35331234 ~ 35331537 (+) True G85845
TU115582 lncRNA downstream 766139 35342357 ~ 35349126 (+) True G85842
XM_022673202.1 mRNA upstream 274713 34298723 ~ 34301134 (+) True LOC111193251
XM_022673197.1 mRNA upstream 311162 34243119 ~ 34264685 (+) True mocs1
XM_022673198.1 mRNA upstream 312881 34243120 ~ 34262966 (+) False mocs1
XM_007248446.3 mRNA upstream 349067 34212417 ~ 34226780 (+) True fosl2
XM_007248490.3 mRNA downstream 61621 34637839 ~ 34643223 (+) True LOC103040539
XM_007248491.2 mRNA downstream 71846 34648064 ~ 34660780 (+) True LOC103040842
XM_007248450.3 mRNA downstream 128820 34705038 ~ 34735575 (+) True kcnk5
XM_022673203.1 mRNA downstream 190844 34767062 ~ 34786115 (+) True LOC103028138
XM_007248452.3 mRNA downstream 211132 34787350 ~ 34792462 (+) True LOC103028446
TU114974 other upstream 2134531 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2134531 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 2357085 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 170596 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 745294 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 1060609 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 3021959 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 4088949 38665167 ~ 38698313 (+) True G86497

Expression Profile