RNA id: TU115571


Basic Information

Item Value
RNA id TU115571
length 361
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G85834
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35195916 ~ 35196276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttcacaaagatcttgcagcagcattgatgatggtagagtctgaccactgcacaaagcagctcttctccatccagcacattcacatcccaaagattctcaatgaggttaagatctggactctgtggtgaactctctcaatccatgtgtgaaaatgatgatctcatgctccctgaaccctgaactctttcacaattccagcaccatgaatcctgacatcgtcatcttggaatatgctcgtgttcatcagggaagaaaaaaatccattgatggagtaacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgatgaacctaaacctgtagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115409 lncRNA upstream 558716 34636506 ~ 34637200 (+) True G85709
TU115410 lncRNA upstream 619698 34575847 ~ 34576218 (+) True G85710
TU115400 lncRNA upstream 678473 34483579 ~ 34517443 (+) True G85700
TU115354 lncRNA upstream 876500 34272022 ~ 34319416 (+) True LOC111193252
TU115351 lncRNA upstream 910677 34272022 ~ 34285239 (+) False LOC111193252
TU115572 lncRNA downstream 15331 35211607 ~ 35218417 (+) True G85835
TU115585 lncRNA downstream 134958 35331234 ~ 35331537 (+) True G85845
TU115582 lncRNA downstream 146081 35342357 ~ 35349126 (+) True G85842
TU115583 lncRNA downstream 154551 35350827 ~ 35353969 (+) True LOC111193253
XR_002650393.1 lncRNA downstream 155188 35351464 ~ 35364586 (+) False LOC111193253
XM_007248452.3 mRNA upstream 403454 34787350 ~ 34792462 (+) True LOC103028446
XM_022673203.1 mRNA upstream 409801 34767062 ~ 34786115 (+) True LOC103028138
XM_007248450.3 mRNA upstream 460341 34705038 ~ 34735575 (+) True kcnk5
XM_007248491.2 mRNA upstream 535136 34648064 ~ 34660780 (+) True LOC103040842
XM_007248490.3 mRNA upstream 552693 34637839 ~ 34643223 (+) True LOC103040539
XM_015605628.2 mRNA downstream 68657 35264933 ~ 35269468 (+) True LOC103041454
XM_022673206.1 mRNA downstream 91939 35288215 ~ 35339832 (+) False tfb1m
XM_022673207.1 mRNA downstream 91940 35288216 ~ 35339832 (+) False tfb1m
XM_022673218.1 mRNA downstream 440534 35636810 ~ 35656610 (+) False LOC111193254
XM_022673219.1 mRNA downstream 471424 35667700 ~ 35686642 (+) True LOC103042380
TU115452 other upstream 395539 34746814 ~ 34800377 (+) True G85740
TU114974 other upstream 2754600 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2754600 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 2977154 32199183 ~ 32218762 (+) True LOC103035447
TU115579 other downstream 125236 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 440551 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2401901 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3468891 38665167 ~ 38698313 (+) True G86497
XR_002650291.1 other downstream 3861435 39057711 ~ 39058582 (+) False LOC111193151

Expression Profile