RNA id: TU115572


Basic Information

Item Value
RNA id TU115572
length 368
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G85835
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35211607 ~ 35218417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCGACTCCCGGGCTAATTGTGAGTATATTCCTTTGGGTGTACTATTTGCTTCTGCTGGTGGCTGACTGAGATCATTTGTGGATTTAGAGTGATTCGTAGCTTGTGTGTGGGCCAGGATACTGCTCTCCTTTCTGTTTGCTACAGCTACCTCGTCTGTGGGAGACTTGTGGGGTCAGCGTGGAGGAGAGCGAGTGTGGATTGCTGTGTCACGTGTGAGAGCCGCGCCGCCACGTGCGTGAGCCGCGTTCCTGCTGCCATTACAGATTTTATTGGACTGCTGCTGTACCTAACCAGAACCTACATTTTAGTAAGGGGGATATATGGTGTGGGAAGGgattataatatttatgttggtttagatttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115571 lncRNA upstream 15331 35195916 ~ 35196276 (+) True G85834
TU115409 lncRNA upstream 574407 34636506 ~ 34637200 (+) True G85709
TU115410 lncRNA upstream 635389 34575847 ~ 34576218 (+) True G85710
TU115400 lncRNA upstream 694164 34483579 ~ 34517443 (+) True G85700
TU115354 lncRNA upstream 892191 34272022 ~ 34319416 (+) True LOC111193252
TU115585 lncRNA downstream 112817 35331234 ~ 35331537 (+) True G85845
TU115582 lncRNA downstream 123940 35342357 ~ 35349126 (+) True G85842
TU115583 lncRNA downstream 132410 35350827 ~ 35353969 (+) True LOC111193253
XR_002650393.1 lncRNA downstream 133047 35351464 ~ 35364586 (+) False LOC111193253
XR_002650392.1 lncRNA downstream 133047 35351464 ~ 35364581 (+) False LOC111193253
XM_007248452.3 mRNA upstream 419145 34787350 ~ 34792462 (+) True LOC103028446
XM_022673203.1 mRNA upstream 425492 34767062 ~ 34786115 (+) True LOC103028138
XM_007248450.3 mRNA upstream 476032 34705038 ~ 34735575 (+) True kcnk5
XM_007248491.2 mRNA upstream 550827 34648064 ~ 34660780 (+) True LOC103040842
XM_007248490.3 mRNA upstream 568384 34637839 ~ 34643223 (+) True LOC103040539
XM_015605628.2 mRNA downstream 46516 35264933 ~ 35269468 (+) True LOC103041454
XM_022673206.1 mRNA downstream 69798 35288215 ~ 35339832 (+) False tfb1m
XM_022673207.1 mRNA downstream 69799 35288216 ~ 35339832 (+) False tfb1m
XM_022673218.1 mRNA downstream 418393 35636810 ~ 35656610 (+) False LOC111193254
XM_022673219.1 mRNA downstream 449283 35667700 ~ 35686642 (+) True LOC103042380
TU115452 other upstream 411230 34746814 ~ 34800377 (+) True G85740
TU114974 other upstream 2770291 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2770291 32436232 ~ 32441316 (+) False LOC103037843
XR_002650385.1 other upstream 2992845 32199891 ~ 32218762 (+) False LOC103035447
XR_002650384.1 other upstream 2996460 32199183 ~ 32215147 (+) False LOC103035447
TU115579 other downstream 103095 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 418410 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2379760 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3446750 38665167 ~ 38698313 (+) True G86497
XR_002650291.1 other downstream 3839294 39057711 ~ 39058582 (+) False LOC111193151

Expression Profile