RNA id: XR_002650393.1


Basic Information

Item Value
RNA id XR_002650393.1
length 264
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC111193253
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35350827 ~ 35364586 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGATGAGCCAGCGAAATTTAAAATGGTCCTGATCTCCTCCATGAGAGTGTGCAGAACGTGGAACATTCTGAGACACAATGGGAATAAAACCAGAATCACCGCTTTCTTGAACACTtaagagagggaagagagagattTTCTGTGAGCTTGGGAGCCCTTTAGACTCAGGGAATTGATCACATGACATTTTAAGGGCTCTTACCTTGACGTAGGACTTCTCAGTGTCCACCAGCTCCTGGATGACCTTGCGCAGTCTCTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115582 lncRNA upstream 2338 35342357 ~ 35349126 (+) True G85842
TU115585 lncRNA upstream 19927 35331234 ~ 35331537 (+) True G85845
TU115572 lncRNA upstream 133047 35211607 ~ 35218417 (+) True G85835
TU115571 lncRNA upstream 155188 35195916 ~ 35196276 (+) True G85834
TU115409 lncRNA upstream 714264 34636506 ~ 34637200 (+) True G85709
TU115608 lncRNA downstream 86606 35451192 ~ 35525452 (+) True G85867
TU115612 lncRNA downstream 165672 35530258 ~ 35533775 (+) True G85870
TU115624 lncRNA downstream 208132 35572718 ~ 35595137 (+) True G85878
TU115629 lncRNA downstream 213429 35578015 ~ 35578859 (+) False G85882
TU115630 lncRNA downstream 213429 35578015 ~ 35578859 (+) True G85882
XM_022673206.1 mRNA upstream 11632 35288215 ~ 35339832 (+) False tfb1m
XM_022673207.1 mRNA upstream 11632 35288216 ~ 35339832 (+) False tfb1m
XM_015605628.2 mRNA upstream 81996 35264933 ~ 35269468 (+) True LOC103041454
XM_007248452.3 mRNA upstream 559002 34787350 ~ 34792462 (+) True LOC103028446
XM_022673203.1 mRNA upstream 565349 34767062 ~ 34786115 (+) True LOC103028138
XM_022673218.1 mRNA downstream 272224 35636810 ~ 35656610 (+) False LOC111193254
XM_022673219.1 mRNA downstream 303114 35667700 ~ 35686642 (+) True LOC103042380
XM_022673220.1 mRNA downstream 303163 35667749 ~ 35686642 (+) False LOC103042380
XM_022673221.1 mRNA downstream 431564 35796150 ~ 35873071 (+) True LOC103042687
XM_022673222.1 mRNA downstream 431564 35796150 ~ 35873071 (+) False LOC103042687
TU115579 other upstream 11633 35321512 ~ 35339831 (+) True tfb1m
TU115452 other upstream 551087 34746814 ~ 34800377 (+) True G85740
TU114974 other upstream 2910148 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2910148 32436232 ~ 32441316 (+) False LOC103037843
XR_002650385.1 other upstream 3132702 32199891 ~ 32218762 (+) False LOC103035447
TU115713 other downstream 272241 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2233591 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3300581 38665167 ~ 38698313 (+) True G86497
XR_002650291.1 other downstream 3693125 39057711 ~ 39058582 (+) False LOC111193151
TU116802 other downstream 4554372 39918958 ~ 39983040 (+) True G86752

Expression Profile