RNA id: TU115585


Basic Information

Item Value
RNA id TU115585
length 254
lncRNA type intronic
GC content 0.57
exon number 2
gene id G85845
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35331234 ~ 35331537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggagggtgaagactaacacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagacatcatcctaggagtgatgtggggagagagaccatctacccacccggagggagcagggccaattttgctccctctaatgccggcagcttgatggcaaagctgcatgagcgggggttcgaacctgcgacctcctgctcatagtggcagcgctttagaccgctggaccactcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115572 lncRNA upstream 112817 35211607 ~ 35218417 (+) True G85835
TU115571 lncRNA upstream 134958 35195916 ~ 35196276 (+) True G85834
TU115409 lncRNA upstream 694034 34636506 ~ 34637200 (+) True G85709
TU115410 lncRNA upstream 755016 34575847 ~ 34576218 (+) True G85710
TU115400 lncRNA upstream 813791 34483579 ~ 34517443 (+) True G85700
TU115582 lncRNA downstream 10820 35342357 ~ 35349126 (+) True G85842
TU115583 lncRNA downstream 19290 35350827 ~ 35353969 (+) True LOC111193253
XR_002650393.1 lncRNA downstream 19927 35351464 ~ 35364586 (+) False LOC111193253
XR_002650392.1 lncRNA downstream 19927 35351464 ~ 35364581 (+) False LOC111193253
XR_002650391.1 lncRNA downstream 19927 35351464 ~ 35353988 (+) False LOC111193253
XM_015605628.2 mRNA upstream 61766 35264933 ~ 35269468 (+) True LOC103041454
XM_007248452.3 mRNA upstream 538772 34787350 ~ 34792462 (+) True LOC103028446
XM_022673203.1 mRNA upstream 545119 34767062 ~ 34786115 (+) True LOC103028138
XM_007248450.3 mRNA upstream 595659 34705038 ~ 34735575 (+) True kcnk5
XM_007248491.2 mRNA upstream 670454 34648064 ~ 34660780 (+) True LOC103040842
XM_022673218.1 mRNA downstream 305273 35636810 ~ 35656610 (+) False LOC111193254
XM_022673219.1 mRNA downstream 336163 35667700 ~ 35686642 (+) True LOC103042380
XM_022673220.1 mRNA downstream 336212 35667749 ~ 35686642 (+) False LOC103042380
XM_022673221.1 mRNA downstream 464613 35796150 ~ 35873071 (+) True LOC103042687
XM_022673222.1 mRNA downstream 464613 35796150 ~ 35873071 (+) False LOC103042687
TU115452 other upstream 530857 34746814 ~ 34800377 (+) True G85740
TU114974 other upstream 2889918 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2889918 32436232 ~ 32441316 (+) False LOC103037843
XR_002650385.1 other upstream 3112472 32199891 ~ 32218762 (+) False LOC103035447
XR_002650384.1 other upstream 3116087 32199183 ~ 32215147 (+) False LOC103035447
TU115713 other downstream 305290 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2266640 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3333630 38665167 ~ 38698313 (+) True G86497
XR_002650291.1 other downstream 3726174 39057711 ~ 39058582 (+) False LOC111193151
TU116802 other downstream 4587421 39918958 ~ 39983040 (+) True G86752

Expression Profile