RNA id: XM_022673218.1


Basic Information

Item Value
RNA id XM_022673218.1
length 1377
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC111193254
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35636810 ~ 35658087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATTGTACTGTGCGAGTCTGTTGCTGTGTTGACAGGGTCAGGTAAAACAGGCTACAGAGAGTTCTGAGGCTATTACTGGATCACAGCATGtcggacacacacactcacacacacacctggagaTGAGTCTGACTGAGCTCTGCTTATGAACTGCTGAGAGAAAGATCAAGAGGTCAGGAGCGACacctgtaaaaatatatagagAAACGGCACTATGGCACCGATCTACGTCGCTCTGGGGGCCTGGGAGGCAGCAGAGTTACCAGGAGCCGCAGTTTTCTCACTGGTTACgctcttcatcatcaccatcacactCCTCGCTCTGTGCTCAACATGTCAGAAgcACTCCTTTGATCTAGATCACAGCGCTCCTGAAGACAGGAATTCAAACCTAGTCCGAGTTGTTCAACTGGAAACCACCAACATGTCCATGGATAACCCCGGTGCTGCTGACATCACCAGAGATGAGAAGTATCTCAGCACATTCCGTCCGGACGGGGCGGCAAAACCTGCTGCAGCGCGAGACACCGGGACCTGGAGGAGTCACACACTAGATCGTGACCCACAGAGGATGATAAATGGTAGTACCAGACAAGACCTCACCATCCGTAACCAAAACCCCAACCCATCAGCATTTGAGCCTTCAATCACTGAAACAAGCCAACAATCTGAGGATCAGACTGTATCTACACACACTCCAGAGCCGCACGAGTTCCAAACAATCTCACTGGATGATCAGACTGATCAGACTGAACCTGAATCTCCACCACCATCATACACCCCCACCCAGCACCTGTATGAAACTGCAGAAGAACTGAGACGTCCAGGAGTCTCTAtggaaactaaactgaatcCATACGCTACATGTGAGTCCATCATGACAAACAGCACAAATGACACAAATGAGCCACAAGAGGGCTGGTCAAATATGCCGCCACCACCGCCGCCGCTGGCAGAGGAGCTGAATGAAGGTCCCAGTAGTCCAGTTATTGACACATATGCCAGAGTCAGCAGGAAAAACATGAATTTTAACGCACCAGTTGAGCTGACGCTTGAGGATGAGGCAGAGGAAGCAGAGCCACCTCTACCACAGAGGAGCTAAACAATAGAGACATTGTTATGAGGTGCCACAAGTCTGCTGAGATGTGTTAAATCCTAGGgctgcaatgctcattgctatattACACCCtgtaaacagtctattttcacaccttgtgcccACGAAAGCATCTAGgattaggaataaatctacactgatgggtaaatacaggtgcgccactgattgaAATGAACCCAGAGAAaaaaacccaacttttaactcaacagaataaagaataaaacagaacaaaactcaataaacagaataaagaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115710 lncRNA upstream 12239 35624212 ~ 35624571 (+) True G85940
TU115706 lncRNA upstream 24874 35611012 ~ 35611936 (+) True G85936
TU115696 lncRNA upstream 30991 35604483 ~ 35605819 (+) True G85932
TU115624 lncRNA upstream 41673 35572718 ~ 35595137 (+) True G85878
TU115629 lncRNA upstream 57951 35578015 ~ 35578859 (+) False G85882
TU115759 lncRNA downstream 69293 35725903 ~ 35726664 (+) True G85978
TU115767 lncRNA downstream 220622 35877232 ~ 35877847 (+) True G85986
TU115772 lncRNA downstream 223270 35879880 ~ 35946282 (+) True G85990
TU115777 lncRNA downstream 237938 35894548 ~ 35986680 (+) True G85995
TU115782 lncRNA downstream 309461 35966071 ~ 35966372 (+) True G86000
XM_022673206.1 mRNA upstream 296978 35288215 ~ 35339832 (+) False tfb1m
XM_022673207.1 mRNA upstream 296978 35288216 ~ 35339832 (+) False tfb1m
XM_015605628.2 mRNA upstream 367342 35264933 ~ 35269468 (+) True LOC103041454
XM_007248452.3 mRNA upstream 844348 34787350 ~ 34792462 (+) True LOC103028446
XM_022673203.1 mRNA upstream 850695 34767062 ~ 34786115 (+) True LOC103028138
XM_022673219.1 mRNA downstream 11090 35667700 ~ 35686642 (+) True LOC103042380
XM_022673220.1 mRNA downstream 11139 35667749 ~ 35686642 (+) False LOC103042380
XM_022673221.1 mRNA downstream 139540 35796150 ~ 35873071 (+) True LOC103042687
XM_022673222.1 mRNA downstream 139540 35796150 ~ 35873071 (+) False LOC103042687
XM_022672507.1 mRNA downstream 403240 36059850 ~ 36139729 (+) True efcab11
TU115579 other upstream 296979 35321512 ~ 35339831 (+) True tfb1m
TU115452 other upstream 836433 34746814 ~ 34800377 (+) True G85740
TU114974 other upstream 3195494 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 3195494 32436232 ~ 32441316 (+) False LOC103037843
XR_002650385.1 other upstream 3418048 32199891 ~ 32218762 (+) False LOC103035447
trnat-ugu_82 other downstream 1941567 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3008557 38665167 ~ 38698313 (+) True G86497
XR_002650291.1 other downstream 3401101 39057711 ~ 39058582 (+) False LOC111193151
TU116802 other downstream 4262348 39918958 ~ 39983040 (+) True G86752
TU116847 other downstream 4528027 40184637 ~ 40188903 (+) False G86786

Expression Profile