RNA id: XM_007230067.2


Basic Information

Item Value
RNA id XM_007230067.2
length 1918
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC103028981
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6886115 ~ 6894577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAACAGCGGCATCCAAATCTCCTACAGTAACAGTGAAGTGCTCTGGCAAGGCAGGTCACAGCCTTTAAAATTAACAATGAGATTTGAAGATGTTCTCCTGCGTGTCGATGGTTTTGGAACCTTCCAGAAGATGCTCCTCCTCAACAATTTTGTCGGTCGCTTTAGCCTCGTCAGCCACTTTCTGCTGAACGTCTTTATTGCCGTAATTCCATCTCACCACTGTGACTTTAGTGCTCTGGACGTTTACAATGTTTATGAGAATCTGACTCAGGAGCAGAGACTGACTGTCAGTATTCCTCAACATGGAGATGGAACCTTTGATTCCTGCTACATGTTCTCAGAACCTCAGTTTCACCTGCTCTCCAACTCGTCTGATACTACAGAACTCCCTGTGGTCCGGTGCCAGAATGGATGGGTCTATGACAACAGCACCTTCACCAGCTCTCTGGCCACACAGTGGGATCTGGTGTGTGAAAACGTTGGGATGAATAAAGCTGTTGCGACCATCTTCTTCATTGGGGTAATGTTTGGAGCTGCTGCGTTTGGCAGCCTAAGTGCCACATATGGTCGAAAGAGGATGCTCCTGGTCTCATATATTTTAGGGATGGGCTTTGCATTGGGAAGCACCTTCTCCAGCTCTTTCATCATGTTTGCAGTCTTGAGGTTCTTCACTGGCTTCAGTATCACTGGCATTGTCATCGTCTCTACTATACTCAATGTAGAGTGGGTGGACATTAAGCACAGGAAGATGGTGGGTATGATTGACAGCATCTCATGGACCTCTGGGACCATGTGCTTCTCATTGATTGCCTACTGGATCAGAGATTGGAAATGGCTGACGGTGGCTGTGAGTTTACCAATCGCCGCTTCCATCATTTCCTGGTGGTGGATTCCTGAGTCTGCTCGGTGGCTAATAGCTAATGGGAATGTGGACAAAGCTCATTATTACCTTCAGAAATGTGCTGATATGAATAACAGGAAGGAAATAATGTCCAGCATCAAACCTGAGACACTCTCCAGTATTGTCGTCACAGAAGAAGGGAATCGGAAATACTCGTATCTGGATCTGGTGAGGACTTCTAAGATAAGGAGACTGGCCCTGCTCACTGGTATTACCtgGTTTTGTGTTGCCACTGTTGCCTATGGAATTGTATTCAATGTTGGAAGTTTTGGCCTGAACTTGTTCTTGACTCAGTTTGTGTACGGAGCCATCGAAGTTCCTACTAAAGTCGGCACGTTCTTCCTGCTCGACAAGATCGGCAGGCGGGCCATAGTGGTTGGAGGTCAGCTATTGGTTGGTCTTAGTCTCCTGATTAACATCTTTATACCTAAAGATCAGACAGTGGTTCGGACGGTTATAGCAGTGCTGGGTCGGGGATGTTCTTCTGCCTCCTTTATGACAATAGTGCTGTACAGCTCTGAACTCTACCCAACTGTCCTCAGGCAGAACGGGATGGGCTATAACTCCTTCTTGGCTCGGCTGGGCGCGGCTATGGCACCTCTGATCCTCCTATTGGATGAAGTGTGGGGGTACCTGTCTCAGGTGATTCTGTGCTCTGTGGCGCTGCTGGCCGCACTGGTTGCCTTTCAGCTGCCTGAGACGAGACACAGATGTCTGCCTGAGACGATAGAGGACATCGAGGGGAGAAGGATGTCTCTGtaacttcattttaaagtaaaagacTGATTCTTTGGAAAATGTGGAGCTGGAATTAGTATTATGggccatgacttttgccatgtctcatgTAAGCTTTAAATGTGGATGGGATTTCTGCTGAATCATTACCAACcaatgctctgtccactgtggatggtaatacCTTCTGCGATGTATGATGTGTACCTACGTGgtactgtggattgaggaatatTAAATGCCTGCATAACtttgtaaataaaacaatttaaaaatca

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105780 lncRNA upstream 13710 6862977 ~ 6872405 (+) False LOC103024862
TU105770 lncRNA upstream 65553 6814777 ~ 6820562 (+) True G78470
TU105771 lncRNA upstream 71541 6812532 ~ 6814574 (+) True G78471
TU105709 lncRNA upstream 135805 6749685 ~ 6750310 (+) True G78426
TU105708 lncRNA upstream 137579 6747979 ~ 6748536 (+) True G78425
TU105832 lncRNA downstream 5305 6899882 ~ 6906124 (+) False G78521
TU105833 lncRNA downstream 5305 6899882 ~ 6906647 (+) True G78521
TU105840 lncRNA downstream 23039 6917616 ~ 6924022 (+) True G78528
TU105849 lncRNA downstream 32777 6927354 ~ 6928056 (+) True G78531
TU105848 lncRNA downstream 32796 6927373 ~ 6928056 (+) False G78531
XM_007230056.3 mRNA upstream 2019 6872563 ~ 6884096 (+) True LOC103025489
XM_022672466.1 mRNA upstream 13710 6857354 ~ 6872405 (+) True LOC103024862
XM_022672642.1 mRNA upstream 35663 6833585 ~ 6850452 (+) False LOC103028659
XM_022672641.1 mRNA upstream 35663 6836184 ~ 6850452 (+) True LOC103028659
XM_022672640.1 mRNA upstream 60051 6773726 ~ 6826064 (+) True LOC103028352
XM_015606155.2 mRNA downstream 80338 6974915 ~ 7073508 (+) True hhat
XM_022672650.1 mRNA downstream 331913 7226490 ~ 7244752 (+) True LOC111193178
XM_007257595.3 mRNA downstream 360536 7255113 ~ 7277103 (+) True LOC103030509
XM_007257590.3 mRNA downstream 390271 7284848 ~ 7312292 (+) True rab3gap2
XM_007257592.3 mRNA downstream 390271 7284848 ~ 7312292 (+) False rab3gap2
TU105776 other upstream 24958 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 1358150 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 2587931 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 3466116 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 3469204 3416839 ~ 3416911 (+) True trnav-aac_3
TU106040 other downstream 700130 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 761752 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 761752 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 1641339 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 1647551 8542128 ~ 8549968 (+) False G78817

Expression Profile