RNA id: XM_007230945.3


Basic Information

Item Value
RNA id XM_007230945.3
length 2742
RNA type mRNA
GC content 0.52
exon number 8
gene id fbxl4
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31524951 ~ 31540915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtaaacacaggcacacactcGTTCACTCCAATGGCCGCAGGAAGGTTTTTTGACACACTTTCTCCTTCTGGTCTTGTGTCATGCATGCAGCTCGTCCTGTAGCCTGTGCAGTGTAGTCGCTGGGGGGGTGCTATCTGACCCTGAATACCCCCCTACCCCTGCCCCTGGCCTCCCCAGCCCCTATGTTCCCTATGCTAACCCTTCTCAGCATGTTTTACTATATCTGTCTGCGGCGGCGGTGCAGGAGCGGGTCCCGGGGAGAGTCTCTGGGCGGACGGCGCGCGCTCGTCGATTTGGGTCAGCGTTCCACCCTGCCAGTGACCGTAGAGGTGGAACAGTACGCTAAGGAGGTTCTAGACTTCAGCTCGCATTATGGCAGCGAGAACAGCATGTCCTACACTATGTGGAACCTGGCTGGGGTGCCAAACGTGTACCCCAGCTCTGGAGATTTCACTCAGACGGCTGTGTTTCGGACGTACGGACGCTGGTGGGATCAGTGTGTTAGCTCTCCTGCCCAGATACGCCGCACACCGCCCTCCTTCCACAGCCGAGACTTCCTGGAGCTGGCTTTCGAGGAGCAGGTGTACCCCACCGCTGTGGAAGTGCTGGAGACCTACCATCCGGGTGCTGTTGTGCAGATCCTGGCCTGTTCACTAAATCCGTTTACGCAGAATCCACCTGCTGATGTCAGGTGGGAGGTGTTATGGTCAGGCGAACCCACTAAAGCCATGAACCCCCAGGCTCGTCAGTTTTCCCCCACCATCCGGCCCATCAACTTCCCCACCAACCTGCTGCGTCTGGAGGTGAACAGCTCTATGCTGGAGTATTACACCGAGCTGGATGCAGTGGTCCTGCGGGGGGTCCGCGAAAGGCCCATCCTCGCACTCTATAAGATGCCTATGATAGACATCAGCGATCTGAGTGATGGTGAAGAGGACCTGAGTGAGACCGGGGGAGCCCTATGCTGCAGGTCTGCCGCTGCTGACCACAAGCACAGCCTTGGCAACGGCTACTTCGATAAACTGCCATACGAGTTGATCCAGGTAATTATAAGTCACCTGGCGGTTCCTGATCTGTGTCGTTTGGGTCAGTGCTGTAAACTTCTGCAGCAGCACTGTTCTGATCCGCTGCAGTACGTCCAGCTCAGCCTGCAGCCGTACTGGTCTCGGCTCAACGATGCATCACTCGCCCATCTACAGCCACGCTGCACACTCCTGCAGAGACTCAACATGTCCTGGTGCGGAAACCGAGGAGCCGTGACGGCCGCCGGATTCTGCAGcttcaTCAGGTCGTGTGGAATGAGCTTGGTGTGTCTGGAGCTGTCCTGCTGCCATTTCCTGAATGAAATGTGTTTGGAGGTCATCTGTGCGACGTGTCCACGCCTGCAGGAGCTGGACCTGTCCTCGTGTGACCGGCTGCAGCCTCAGGCCTTCACACACATCGCCAAGCTCGCACACCTTCAACGCCTCATTCTCTACCGCACCAAGATAGAGcaaaCAGCCATGCTGAACATTCTGACATTCTGCATTGAACTGAAACACCTCAACCTGGGCAGCTGTGTGATGATAGAGGATTATGACGTGGTGGTGAGCCTGCTGGCGGCACGGTGTCGGGGGTTGGTGTCTCTGGACCTGTGGCGCTGTAGGAACCTGAGTGAGCGGGGGCTGGCCGAGCTGGTGGCCGGCTGTGCAGGGTTAGAGGAACTGGACCTGGGCTGGTGCTCCAGTCTCCACAGCAGCTCCGGCTGCATCCAGCTGTTGTGCCGCAGGCTGAAGCGTCTGCGCAAACTGTTCCTCACCGCAAACCGCACCGTCTGCGATAACGACCTCGAGCAGCTTGCAGCGAACTGCCCTTCACTGGAGCACCTCGACATACTGGGTACGAGGATGGTGAGTCCGGCCGCTGTGCGCAGGCTGCTGCAGTCGTGTCCTCGGCTGCGATTGCTGGACGTCTCCTTCTGCTCTCAGCTCGACACACGGACTGTACAGGAACTGACCAACCTGTTCCCGAACATCTCCATTAAAAAGAGCTTCACCCAGTGACCTCTGCACTAGCCAGCCTGCAGGGGGCACAGGGTTTTACTGGTGCTGCAGTTGTGACTGCTCTgcattacagtgtttttacagcAATAGTCTAAAAAAGAACAGCGTTTCTAATCTCACCTCATgtgtagtcaatcagaaaagACATGTGTGATTGTCTGCAACCTTTGACATGCCACCCAAAAATATGATCTCTCAAAGAGAGTCACGTCAGTCACTGCGCAACATttcataacatttaaaaaattaggTTGTAAACTACAACCGCaagttaatattatttaataataattataattgaaTTTCGCAATTGTTTTCCCTATTATCTTTTTATAAATTAGTGTTTTGAAATACACACATTCAGAGTGAGTTTTGGTGTGAAATTTTGGTTTATTGTAGAGAAAAAAACTACCAGTTTGGATTTCTAAGCAGTGGTGGTGATGGGAAAATTTACATTtgcataaattacatttttatttacattatttttatagcatttagctgacgctcttatccagagcaacttacatTGTTATTCGCATTACAGAAATGGGAAAATGTattgttaggagtcttgcccaaggacccTAATTAGTGTAGAACAGCATAGTCACCAAGTCTCCCatatgatgtggtagctcattGGCattgcagtggtgttatccactgcgccacactacaacacaattcagccatttt

Function

GO: NA

KEGG:

id description
K10270 FBXL4; F-box and leucine-rich repeat protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114550 lncRNA upstream 16896 31507081 ~ 31508055 (+) True G85052
TU114527 lncRNA upstream 146900 31372531 ~ 31378051 (+) True G85036
TU114516 lncRNA upstream 168934 31269940 ~ 31356017 (+) True G85025
TU114517 lncRNA upstream 260897 31261549 ~ 31264054 (+) True G85026
TU114510 lncRNA upstream 265098 31243479 ~ 31259853 (+) True G85020
TU114552 lncRNA downstream 2554 31543469 ~ 31544202 (+) True G85054
TU114703 lncRNA downstream 208788 31749703 ~ 31805403 (+) False LOC103034273
TU114824 lncRNA downstream 434000 31974915 ~ 31975302 (+) True G85277
TU114833 lncRNA downstream 457418 31998333 ~ 31998653 (+) True G85282
TU114844 lncRNA downstream 460939 32001854 ~ 32014439 (+) False LOC111193246
XM_007230944.3 mRNA upstream 22360 31480632 ~ 31502591 (+) True faxc
XM_007230943.3 mRNA upstream 46054 31472138 ~ 31478897 (+) True coq3
XM_007230941.3 mRNA upstream 55395 31454993 ~ 31469556 (+) True pnisr
XM_007231661.3 mRNA upstream 114158 31389451 ~ 31410793 (+) True LOC103047815
XM_022673169.1 mRNA upstream 286269 31153609 ~ 31238682 (+) False znf236
XM_007230946.3 mRNA downstream 171869 31712784 ~ 31759540 (+) True mms22l
XM_022673175.1 mRNA downstream 176526 31717441 ~ 31759540 (+) False mms22l
XM_007230948.3 mRNA downstream 260649 31801564 ~ 31804699 (+) True LOC103034273
XM_007230949.3 mRNA downstream 271352 31812267 ~ 31819852 (+) True rwdd1
XM_007230950.3 mRNA downstream 294433 31835348 ~ 31849464 (+) True kpna5
XR_002650381.1 other upstream 62691 31454984 ~ 31462260 (+) False pnisr
LOC107197844 other upstream 2446053 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 2481212 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 2483344 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 2499837 29004094 ~ 29025114 (+) False LOC103045392
TU114720 other downstream 282671 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 658268 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 658268 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 658976 32199891 ~ 32218762 (+) False LOC103035447
TU114974 other downstream 895317 32436232 ~ 32441316 (+) False LOC103037843

Expression Profile