RNA id: XM_007230946.3


Basic Information

Item Value
RNA id XM_007230946.3
length 3965
RNA type mRNA
GC content 0.55
exon number 25
gene id mms22l
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31712784 ~ 31759540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAACCAATCACAGAAGCGAGTCGGAGGATTCTGCAGTCGTGCGCATGCTCAGTGTAAGCGCGGGATTGTGAACAGCTGTAAGCGGAGCGTTGGCGTCAGCAGTGTGATGGAGGATGATTTCAGTCCGTCTCTCACTCCACCCATCTCCCCGTTCATGCCGGAGGATGTGTGTGAGCCGATCACACGTCCGCCCTGCTTCACCTGTGTGTACGAAGCAGGAAGAGAGGATACACACGCTCTGTCTTCTGACGGCTACGTCAGCAGAGGAGTTCTAAAGAGGTTGCTGTTGAAGTTGGACCCGTTTCCTGCGTGCTTTGAAACAGATACTGTAGATATTTTTGGCTTCTCCTGGGTGACTGAGACAGCGCTGGTGGAGTCCACTAAACTTCTGTTTGGCTTGTTCAGACAAAAAGTGTTCCGACTGGAAACTCTGGTGCAGTCCAGCTCTCATGATTTCGGTCAGGCGAGTGGTCTTCATTACGAAGCAGAAGAGCTGAGACAGCAGTGTGTGCTCTTTCTCAGCTACATCAAGGTCTTCATTCACAGGTTCCTGGATGTTTCTCAGCCTATGGATGAAGGCTTTGTTCACCCGTACTCTGAGCTGGAGGCAAAATTTCCCTCCTCTTTAGTGGAGGAGCTGTTCGGCATCACGCTGCTTATTGGTCGCCTCAAAGACCTGCCTTCTAATGTCCAGAGCGCACTGACCATCCACCACCAGGGAAAGCTTTTCCCTCCATCCTGGCATTTACTGCACCTGCACCTTGACGTTCACTGGGCTGTGCTGGAGATACTGCACCTTCTAGGACAGAAGACGATGGGTCAGGTGGTGTACGCGCACCAGTTTGTGGACTTAACTGGAGAAACTTTAACCAACATCAGCCTTTTTGAAGACCATCTGAAAAACCTGCTGTGTGACCTCATCGGCCTGGCCATGAACAAATACAACAAGGTGAGACCGACTGAGGCATTAACCAGCCATCATTTTTACTGCATCTGCACCAAAGAACTGTGGATCCTCCTCATACATCTGCTGGAACATCGGAGTAAAACACTACACTCACAGTCGTTTTGGGGCTATCTGAACGCACTGCTGCAAGCTGTACTGAAGGGGGCGCCGTCAGGTGACACAGGGCTGCCGGCACACTGTAAAGATCCCCTGGGGTTCACCTGGTGGTTCCTTACGCACATCGCCCAGCTTGGCATGCACAGCCGCAACGGATCACTGCAGAGTGAGAAACAGATGGAGGACAACTGGAGCTTTGTATTGGAGCTGCTGAAATCCAGCTGTGATTTGAAGGCTGCCTTGCAGGAGGAGCAGGTGCGCATGCATGTgcactgctgtctctctctcagtctgctgTGGGGAACCAACACTAGTGCTGTTAACACGCTATGGGAATACTACAGCAAAAACCTGAACGGATCGTTCTCTGTGCCGTGGCTGGGTGTTTCTGGTTTGGGCAGCATTAGCCCCACCCCCCTTACCCTGCTGGAACAAGCCAAAAACTGCTGCAGCCCCGACCCCGTGACCTCCGCCAGCCACCTCCAGCTCTACCGCTCTGCCAACTCCTTCCTCATCTTCCTGCGGATGCTGGCGTTACACCTGAACCAGGACAGTGCACCTGGAGCACCATGGAGGCAGATCAAGGGCAGGATCTACTCCAAGTTCCACGCCCGTCGCATGGCAGAGTTGTCTGACTCAGGCTTgcatcacttcctgttactgttCCTGGTGCTGGCGCGCTGCGGTGACCTGGAAGATGCGGCCGGCAGGGCAAGTGACCTGCTGACCCTGCTGGTGCCCGGCTCGGTGTCCCCAACCCTGTGTGCCCTGCAGTGGCGCGGGCAGCTGgcactcctgctgctgttcggTGGGCATGGCCTGGACCTGGCCCCGCTGGCATCCAAGCTCTCGTCCTCCTTCACCAACGCCGCCCGCGAGTTCTACCTGAAGACCACAGAGCCGGCCCGCCGGGCAGCGCTGTGGCAGCCTCTGTCTGCGTACCTGGAGGGCGCGGCGGAGCTGTGGCAGACCAGCACCACCCTGTGCCAGTCTGAGGAGGCTCTGCTTGGAGAAGGCTTTGGCCTGCTGCTGCCAGCCTGCCGTACCTCAGAGCTGAACACGGCACTGAGCTTCCTGTTGACTGCACTGACACAGCTAAGgagTGTGCAGCAGCGGTTTAAGCAGCTTGGTCCCTCTGACTGCCCCAGTTGGGCTCCTCCTCCCAGTGTGGTTAAAGAGCGCCACCTAGCGGTAGCCGTGGCTCTGTGGACTCATTTCTTCCCGTTTCTGCGCAGCTTGAGGCTCTCTCAGACCCCCCCGCCACAGCTGGCTGACGCAGCCACAGGTTTCACTCTGTTGGCACTGGACATGCCCAACTCCGCCCCCCAAGACCTTCAGCCACACCCACTCCAGTCTGTAATGAACAGCTTCGGCTGGGATGAAATGCTCTGCCCCCTGCTGGTGACTCGCTACCTCAGCAACCTGCTGCAGAATGGGGAGCTGGTGGGCTGGATGGGGTCTGGTTCCGGTTCCGGTTCCGCtcaggctctgtgtgtgagagcatgGATTCGCTGTGTTTTACAGCAGCATCTACACAAAACCCCTGACAACAGCAGAGCAGgtaagGTGCTGGATGAGCAGTTAGCTGAGTTAACCAGGCTGGTGCTGCGGCTTCCAGAGGTTGATTCCCTGCTGCAGAGAGCGAGTCTCCAGGCCCCCACTGCAGGAAAGCATGAGCCTAAACCTGCACTGGCACTGTTCATCAAAtcaaTAGGTCGTGTGTATTCCAGTCTGCAGCTGCTGTCCGAGCGCTCCTCTCTGGTGTGTAAAGCGCTGGAGTACTTGGGTGACGTGCTGAAGTTTATTAAACCCTACCTGCTGAACCGCAGCTCGGATGGACTCCACCTCACCTACTGGACACTTGGCTGTGTGGTGAAGCAGTGGAGCCCCCTGCTGGCCACAACCAAAGGGCAGCCACTGCTGCTGCGTATAGTTGACGTCTTGCTCCTACCTCGTTCACTGCTGCAGCAGGACAAAGCCCCGTCCACACAGGACAAGACCCCGTCCACTCAGGTGCTTTCTGCCCTAAAGGAAACGCTCCCGCTGTATCTGCAGGGTCTCTCTATAGCTGCGAGTGTGTCTCAGACGCAGGGTGTGTATCTGAGGCAGCAGCTGCGCAATGTCATAGTCCAATACCTGAGCCGCTTTCTCCCAGCCACGCCCACCGCAGGAGCTGTGGCCAATCACCCCGTGCTCTTGTCTGGTTGTGAGGCCACACCCAGCCCACGAGGGGCAGTGCTAAGGAAGACTATCATGCAGGTGCTGAGGGATAATTTCCTGCAGTTTAAAGGCCACGCCCCTCCTCCTCGATTGGCTGCAGTGCTGTCTTTCCAGCTGGAGCTGCTGAGAAGAAATAATGACTCTGATCCCGACCTCCTAACCGTAACTCTCCCACCGGTGCTGCGCTGTCTGATGCTTGTCAACGAGCCACAGGTAAAGAGGCTGAGTGCAGACTGTCTGCAGCTGATGGTGGAGAGATGTTTGTGTGCAGCTGGAGATCAGCCGTGTGAGCAGCTCATCAGTGTTTTCCGGACGTTTGTGGAGGAGAATGAAGGTGTGTATGAGCTGCAGGTGTACAGTGTGCTGGAGACCGTAGCCATCCTCAGTCCGTCCACGGTGTCCACTCTGATTCCAGATCTGTCTCGCTGTATGAGAAACACAGAGCAGAAACGAGGACTCGGCAGGAATATCTCTCtcagGAATGGCTATAAGTCTCTCTTGGCGCTTTTGGGAGAAGCAGGTCAGGCTGAGTTGGTCAGTCTGGAGGCAGATTGATTACTCTGACCTGTGTTCATCACTGCTGTCCtgaatgtaaatactgtatattatgtgTTGAAAGTCATTTCTGTGTTTTGTATCTGAATATGTGccaatttaataaattgttagaagtgtgtgttt

Function

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114552 lncRNA upstream 168582 31543469 ~ 31544202 (+) True G85054
TU114550 lncRNA upstream 204729 31507081 ~ 31508055 (+) True G85052
TU114527 lncRNA upstream 334733 31372531 ~ 31378051 (+) True G85036
TU114516 lncRNA upstream 356767 31269940 ~ 31356017 (+) True G85025
TU114517 lncRNA upstream 448730 31261549 ~ 31264054 (+) True G85026
TU114824 lncRNA downstream 215375 31974915 ~ 31975302 (+) True G85277
TU114833 lncRNA downstream 238793 31998333 ~ 31998653 (+) True G85282
TU114844 lncRNA downstream 242314 32001854 ~ 32014439 (+) False LOC111193246
TU114846 lncRNA downstream 242314 32001854 ~ 32014439 (+) False LOC111193246
TU114847 lncRNA downstream 242314 32001854 ~ 32014439 (+) False LOC111193246
XM_007230945.3 mRNA upstream 171869 31524951 ~ 31540915 (+) True fbxl4
XM_007230944.3 mRNA upstream 210193 31480632 ~ 31502591 (+) True faxc
XM_007230943.3 mRNA upstream 233887 31472138 ~ 31478897 (+) True coq3
XM_007230941.3 mRNA upstream 243228 31454993 ~ 31469556 (+) True pnisr
XM_007231661.3 mRNA upstream 301991 31389451 ~ 31410793 (+) True LOC103047815
XM_007230948.3 mRNA downstream 42024 31801564 ~ 31804699 (+) True LOC103034273
XM_007230949.3 mRNA downstream 52727 31812267 ~ 31819852 (+) True rwdd1
XM_007230950.3 mRNA downstream 75808 31835348 ~ 31849464 (+) True kpna5
XM_022673183.1 mRNA downstream 439648 32199188 ~ 32218762 (+) False LOC103035447
XM_022673184.1 mRNA downstream 439649 32199189 ~ 32218762 (+) False LOC103035447
XR_002650381.1 other upstream 250524 31454984 ~ 31462260 (+) False pnisr
LOC107197844 other upstream 2633886 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 2669045 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 2671177 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 2687670 29004094 ~ 29025114 (+) False LOC103045392
TU114720 other downstream 64046 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 439643 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 439643 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 440351 32199891 ~ 32218762 (+) False LOC103035447
TU114974 other downstream 676692 32436232 ~ 32441316 (+) False LOC103037843

Expression Profile