RNA id: XM_007230949.3


Basic Information

Item Value
RNA id XM_007230949.3
length 1012
RNA type mRNA
GC content 0.47
exon number 7
gene id rwdd1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31812267 ~ 31819852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acgcggtcAGAGTTTCAGGCATTACTAGTCGATAGTGGAGAAGATCGAGTGCAGCCTCTCTTCAGCGGACAGGCACGTTTCTGAGGGCCGGTGGGAGCGGAGCTGTTGATGGACAGCAGTGAAATAAAATGACCGACTACGGAGAGGAGCAGCGGAACGAGCTGGAGGCGATAGAGTCCATTTACCCAGACTCGTTTACAGTTCTTTCTGAAGCACCCACGAGCTTCACAATCACAGTCACTTCAGATGCTGGAGAAAATGATGAGACTGTCCAGGTAACACTAAAGTTCACATACGTGGAGAAATACCCAGATGAAGCCCCTCTTTGGGAGATCCATTCCCAAGAAAACCTTGAGGATTCGGACACAGAGGATGTGCTGACGCTGCTGAAGCAACAGGCAGAAGAAAATCTGGGCATGGTCATGATCTTCACGCTGGTGACGGCTGTGCAGGAGAAACTGAATGAAATGGTCGACCAGATAAAGAGCAGGAGAGAAGAGGAAACTCTGAGAAGAGAAAGGGAAGCTGAAGAGGCAGAGAAGCAAGCATTCCAGGGAACTGTAGTCACGATAGAGAACTTCCTAACATGGAAGGCACAGTTTGAGCAGGATATGTTAGAACTGAGGAGGAAAAAACAGAAGGAGGACGAGcagtctggaaaaaataaactaacagGAAAGCAGCTGTTTGAAACAGATCATAATCTTGACACTTCAGATATCCAGTTTCTGGAAGACGGTGGTAACAGTGTTGAAGTGGACGAGTCGCTCTTCCAGGACATTGATGATTTGGAACTTGAAGAAGATGACCCTGATTTTGACCCACTGGACATAGGCAGTGATGAGGACTAAAGTGGTTAAAAGGGTCAGCCCCAGGAATGGACACAACTGACCATTCATCCTGCCGTTTCTCCTGAACTGTTTCTGCTGCAGGCTGCTGCATATTTTACCAAaactgttaaatttgttcattTCTACCATAATGCCATTAAAATCCCATCAGTTATGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114703 lncRNA upstream 6864 31749703 ~ 31805403 (+) False LOC103034273
TU114552 lncRNA upstream 268065 31543469 ~ 31544202 (+) True G85054
TU114550 lncRNA upstream 304212 31507081 ~ 31508055 (+) True G85052
TU114527 lncRNA upstream 434216 31372531 ~ 31378051 (+) True G85036
TU114516 lncRNA upstream 456250 31269940 ~ 31356017 (+) True G85025
TU114824 lncRNA downstream 155063 31974915 ~ 31975302 (+) True G85277
TU114833 lncRNA downstream 178481 31998333 ~ 31998653 (+) True G85282
TU114844 lncRNA downstream 182002 32001854 ~ 32014439 (+) False LOC111193246
TU114846 lncRNA downstream 182002 32001854 ~ 32014439 (+) False LOC111193246
TU114847 lncRNA downstream 182002 32001854 ~ 32014439 (+) False LOC111193246
XM_007230948.3 mRNA upstream 7568 31801564 ~ 31804699 (+) True LOC103034273
XM_007230946.3 mRNA upstream 52727 31712784 ~ 31759540 (+) True mms22l
XM_022673175.1 mRNA upstream 52727 31717441 ~ 31759540 (+) False mms22l
XM_007230945.3 mRNA upstream 271352 31524951 ~ 31540915 (+) True fbxl4
XM_007230944.3 mRNA upstream 309676 31480632 ~ 31502591 (+) True faxc
XM_007230950.3 mRNA downstream 15496 31835348 ~ 31849464 (+) True kpna5
XM_022673183.1 mRNA downstream 379336 32199188 ~ 32218762 (+) False LOC103035447
XM_022673184.1 mRNA downstream 379337 32199189 ~ 32218762 (+) False LOC103035447
XM_007230962.2 mRNA downstream 600280 32420132 ~ 32425312 (+) True LOC103038892
XM_007230960.3 mRNA downstream 607174 32427026 ~ 32430265 (+) True LOC103038371
XR_002650381.1 other upstream 350007 31454984 ~ 31462260 (+) False pnisr
LOC107197844 other upstream 2733369 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 2768528 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 2770660 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 2787153 29004094 ~ 29025114 (+) False LOC103045392
TU114720 other downstream 3734 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 379331 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 379331 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 380039 32199891 ~ 32218762 (+) False LOC103035447
TU114974 other downstream 616380 32436232 ~ 32441316 (+) False LOC103037843

Expression Profile