RNA id: XM_015600847.2


Basic Information

Item Value
RNA id XM_015600847.2
length 1296
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103037625
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30713604 ~ 30746863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGAGGCCAGAAATAgcccaggctgctgctgcagtgcCCTCTGAGCGCTCCGGGAACCTGGGCCGAGTGTCGCAGTCTGTACTCACTGCTCTCAGCTCCACCTGAATATTTATCATGGTTATCAAAGTGTTTCTGGCCTCCTCCTCGGGCTCGACGGCGataaaaaagaaacaacaagaTGTGCTTGGCTTCCTGGAAGCTCTAAAAATCGACTATACTCAGCTTGACATTGCCTCAAATGAAGAGAATCGCATGTGGATGAGGGAAAATGTGCCTGGAGAGAAGAAGCCTACCAACGGAATCCCACTCCCACCACAGATATTCAATGAGGAGAGCTACTGTGGGGACTATGAGACGTTCTTTGAAGCCAAGGAGGACAACTCTGTATATGAATTCTTGGGTCTGACCCCTCCAGCAGGATTTAAGAAAAAGCCCCCTGTGGAGGAGGAAGCCCAGGGGGAAGAGGGAGAAGAAGAATTTGAGAGGgaggaggaggaacttCGACATATTGAGGAAGAGACAGAAGAGCCAGTCGTTGAGGAACAAGAAGAGCCAGTTAGTGAGGAAGAGCCCCAAGAAGAGCCAGTCAGTGAGGAGGGAGAAGAGGCAGAGGACTAAACTTCTCACAGGGATGATTACAACACTTAAGccAAAAAAGACCCACTGTGTCAATCGCCTGTAATTGACCACTTCAGCAACTACACCTGACCATCCTTCAACAAAGTTCCTGACCACAATCCAGGAAAAAGACTTTTCAAATGGCTGAAATCCAGAAACTCAGTCCAGGAATGTACCACTATCTGCCTATTAGCtaaaactagattttttttttactatgatgacattgtaatatttgtttaaatcatTGTCAGAATTTCTGTCTTGGAAAATATTTATAGAACAAATACAAAGTTCAAGTTTTACCACTAAAACCTCCAGTGCATGTAGGACTTTTAGTAGACATTAGTACTGCTTCTGTCCTATGCTAAGTCCTATGCTTTTGACACTGAGtacagttatacagttataGAGTAGATGAAGCTAGTATATGTGTCGAAGCATTTTAATTAGGGCTCTCATTATCAATAATAAAAGCAATTAAGGACAATATAAAGATAGGCATTTTTAAAGTTAAGCTAACATTAACAGCGTTGTTGTCCATATGATTGTGATGGCCCTATTTTGAATGTATTCTGATGTATTTCTTTGTATGAGAACTGAAATGCACTTTTGTTTAATGTAGACCGACTAAATGGAAAATAATTGAATGccattaaaatgtgtgtggCATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114274 lncRNA upstream 6427 30704476 ~ 30707183 (+) False G84858
TU114276 lncRNA upstream 6427 30704476 ~ 30707183 (+) True G84858
TU114245 lncRNA upstream 24449 30686920 ~ 30689161 (+) True G84831
TU114231 lncRNA upstream 98557 30612058 ~ 30615053 (+) False alg3
TU114230 lncRNA upstream 99598 30612058 ~ 30614012 (+) False alg3
TU114297 lncRNA downstream 23738 30770601 ~ 30771083 (+) True G84870
TU114307 lncRNA downstream 58338 30805201 ~ 30805742 (+) True G84877
TU114354 lncRNA downstream 151056 30897919 ~ 30899179 (+) True G84906
TU114313 lncRNA downstream 166020 30912883 ~ 30922290 (+) True G84881
TU114314 lncRNA downstream 166020 30912883 ~ 30915338 (+) False G84881
XM_022672497.1 mRNA upstream 81978 30627847 ~ 30631632 (+) True LOC111193145
XM_022672499.1 mRNA upstream 81978 30627847 ~ 30631632 (+) False LOC111193145
XM_022672498.1 mRNA upstream 81978 30627847 ~ 30631632 (+) False LOC111193145
XM_007231619.2 mRNA upstream 98548 30606757 ~ 30615062 (+) True alg3
XM_022673148.1 mRNA upstream 149816 30425710 ~ 30563794 (+) True LOC103031349
XM_022673164.1 mRNA downstream 136445 30883308 ~ 30892684 (+) True rpp40
XM_022673165.1 mRNA downstream 136445 30883308 ~ 30892684 (+) False rpp40
XM_007231650.3 mRNA downstream 176106 30922969 ~ 30938428 (+) True LOC103044961
XM_007231651.3 mRNA downstream 195813 30942676 ~ 30991541 (+) True znf407
XM_015600856.2 mRNA downstream 283148 31030011 ~ 31049206 (+) True tshz1
LOC107197844 other upstream 1634712 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1669871 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1672003 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1688496 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1713504 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 708121 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1076723 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1452320 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1452320 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1453028 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile