RNA id: XM_007231651.3


Basic Information

Item Value
RNA id XM_007231651.3
length 5182
RNA type mRNA
GC content 0.51
exon number 9
gene id znf407
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30942676 ~ 30991541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGACGCAGGGCAGGGATGTGACGTCACAGGCGCTGTACGGCGCGCCGCTGGTGACCGGAGCAGAAAGCGCGGAGTGAGAGAAATCGCGTGGAATAAGAGGAGAGCCTGATGGAGTTTTAATTCAGGATGGATCCGTTAAAGAGGAAATTGCGGTCAGGGAAAGAGATGGCTGAGAGCAGCGAAGACGGGGACACCCTCTCTGAACCTAAAAGGGCCAAGGCTGATAACACCGGCACAGAGGATGCATCTTCGTCTAAAGAAAATGAAGGAACTCAGGACGAATCTTTGGGGAACAGAGAAAGCTGTGCTTGTtctttgtgtgattttgtggcAAAAACGCCAACTGCACTAAAAATCCACTCTAAACGGAAACACTCGGTGGGGGCTTTGAGCTCACAAACAGAAACTGTCCCTGAGAGGAATGGTGAAGAGTCAGCTGTTTctgatattaaagacattaaagagaTGGAAAACACTTCTGAAGAGAACCAGGGAGACTTGCATCAGCCTGAGCAAATAGTGACTTTACTGATCTCGCAGGAACAATCAGAAACTGCCTCCAGTTCTCATATAGAAGGCACATTGGAGCAGCCTGTGGCTCAAGCACCTCAGAAACCCTCTGAGGAGTCAGCAGGGGGCAGCACCAGCCCTACACGCATTCTGTTGGAGATGGTTGACCCTTTGTTGGGTGAAGGAAATGAAGAAACGAATCAAGGGAATGTGGTTGCTGAAGATGCAGGGAACGAGGAGAGCCAGAATGGTTCTTCCTGTAGACCTGCGGTTGAGGGTAAGCGAACCAGCAAAAGGTGTCCAAAGCCTAAAGTCCTGCATGCATGCTCCCACTGTGGGCATGTGTTTCGAGACAGGCCCAGTCTTGAGATGCACGTTAAGAGACGACACACCAAGGAAATGAACTACTTCTGTGAATGCTGTTCATACGCATGTGTGGCCAAGTGCGATTATGAGAAGCACTGCATGAGcaataagcacaaaaagaaaATGTCAGAGAACAAAGAAGCACCTCCTAATGCTGAAAGGTCTGTTTCTTCAGGGGGTTCCACTGAGCTTCAGTGCAACAGCTGCTCTTTTACAGCCAGCACCACTGACCTGCTTAGCCACCACATGAAACTGCAGCATGGCGCGGAGAGCATGGTGCACTGCAAGGTGTGCCAGTACACCTGCACACCTGAAGCAATGCAGACTCACCTGGAGGAAGAGTCCCACCTGCATGCCGCCAATGAGAAAAACATCAGTCCGCTGTACCAAGACTGTGTGGAAAATGTTCTGGTGTTACTttcagaggaaaagaaagataaagggcAAACAGAACCTGTCCCAGAGTTGCAGGAAAGCTCAGAAGAAAACTTGCGTCCTAACAGACAGAAGCGCGGAAGGCCGAAGTCGAGTCTCGTGACCACCTGCAGCCACTGCGGTCTTGTGGCGTCAAATCCCACGAACCTCAGCGTGCACATCCGCCGCAGGCACAGTCGCCTGTACAGCTTCTTCTGCAAACTCTGCAACTATTACTGCGTAACTAAAGGGGACATGGACCGCCACTGCGAGACGAAGAAACATGTTAAGCAAGCACAGGCGAGCGGGGATGGAGGGGCTGTGTTACACTTGGATGGCGAACAGGCAGCACACGCAAGTGAAGAGGATGCGGCATGGCCTGTTCAAACAGAGGGAGCCACCGGAGAGGAAAAAGAAGGCGACAAAGACGTGGAAGAAAGTCAGAGTGAGGCACCTTGCAAGAAAACCAAGTATGACCTCGTGAACTCGTGCAGCCACTGTGATTTCGTTGCCCACTCCGTGTCGTCACTCATGCTCCACATACGTCGCAAGCATATGCGGGACTTTGAGTTTGCGTGCCTGGCGTGCAGCTATTATGCCGTGACTCGCAGGGAGATTTCCCGACACATGGCAACGGAAAAGCACAAACAGAAACGTGAGGTGTACATGCAGGAGCGGTTCAAGAGCAGTTCAGCAGAGCCGGGAGGCCAGGGCATGGATGTTCAAGCACCAGCTGATCAACTGACTCTTGTTGAAGATACAGGTTCTCACGCACCAGAATGTTCTTCAGCTAATGGCTCAAGTGATTCTTCCAAAACTCCCGAAGGAACTGAAGGAGGAACTGAGGGAGGAGTGAATGATGTGACCTTGGAAAGTGTCACTGAGATCAAAGAACCAAACCAAAGTCCAGATGAAAGTTTGGAGGGGTCAAACATCCTAGAGGAACCCACAATGGAGGACATGGAGGAAAATGAAGATGAAAATGAAGATGAAGAATCCCTGGATTTGAAAGCTGTGGGTGAAAATACGCCTCTGAGATTTGCTACACTGGACGAATGCATTTTTCCCCTAAAGGCACAAACAGAGGATCAACAAGATGGGGCAGAAGGAGAGCCAAAACCGACTACTAGCACACTGAGCCTACAGGGAGGGAAAAATCTCAGACCAGTAGGGGGCACTGTGGTCAAAGGTGCTTCTGCTAACCCGCGTATCCGCTGTGAAGACTGTGGATTCCTGGCGGACGGCCTGAGTGGATTGAATGTCCACATCTCCATGAAACATCCATCTAAGGAGAAGAATTTCCACTGCCTGCTGTGCGGGAAGTCGTTCTACACGGACAGCAACTTGCAGCAACACCTGAGCAGTGCCGCTCACATGCGCAACGAGCAGGGCAGCGTTGAGGAGCTGCCTGAAGGGGGCGCCAGCTTCAAATGTGTGCGCTGTAGTGAGCCGTGTGCGACTGAACAGGAGCTTTTCCTGCACATCAAAGAGAAGCACGAGGAGCTGTTGAGAGAGGTTAATAAGTATGTTTTGGAGGACACCGAGCAAATTAACAAAGAACGACAGGAGAATCAAGGCAGCGTCTGCAAGTACTGCGGAAAGGTCTGCAAGAGCAGCAACTCCATGGCCTTCCTGGCTCATGTGCGAACACACACAGGGTCAAAGCCGTTCAGGTGtaaaatttgtaattttgcTACGGCGCAGCTCGGAGATGCACGGAACCACGTCAAGAGGCACCTGGGCATGAGGGAGTACAAATGCCACATCTGCGGgtgGGCTTTTGTGATGaagaaacacctgaacacacacctGCTGGGCAAACATGGACTGGGCCAACCCAAAGAGAGgaAGTATGAGTGTGAGCTGTGTGAGCGGAGCTTCAGTGAGAAGTGGGCTCTAAATAACCACATGAAGCTTCACACCGGAGACAAACCCTACAAGTGCACCTGGGCGTCCTGCCACTACGCTTTCCTCACCCTGTCCGCCATGAAGGATCACTACAGGACTCACACAGGTGAGAAATCGTTTCTGTGTGATCTCTGCGGTTTTGCCGGTGGGACTCGACATGCCCTCACTAAACACCGCCGCCAACACACGGGTGAACGGCCGTTCCGGTGCCACTTGTGCAATTTTGCATCAACTACCCAGTCTCACTTAACCCGGCACAAACGCGtccacaccggagagaaaccctACCGCTGCCCCTGGTGTGATTACAGGTCGAACTGTGCAGAGAACATTCGGAAGCACATCCTTCACACAGGGAAGCACGAGGGGGTGATGATGTACAACTGTCCGAAGTGTGATTACGGCACTAACGCTCCAATGGAATTCCGCAACCATTTGAAGGAAAATCACACGGACATCGAAAACCCTGATCTGGCCTACCTGCACGCAGGAATCGTGTCCAAATCCTTCGAGTGCCGTCTGAAGGGTCAGGGGGCATCATATGTGGAGACGGAAGTTGCGTTTGCTCCGGACGAAGGGCGACTGGGCTCAGAGGCGCTGCAGCAGGTCATCATCATCCAAGGCTATGGCGAAGGGGGTGCTATGgagcaggagctggaggagTCTGCGGCCGCCACGCTGCACACGCTCGCCATGACGCACACGCACGCTCAGCTACAGGTGGCGCAGGTGCTGCACATTACTGAAGACGGGCAGGTCATCCCCTGCCACAAGGTGGCGCCATCTGAGACCAATCTGCCTGAGGGAACGACGCAGTACCTGCTGGTAGAGGGGCAAGAGGAGGGCCAGAGTGGCCAGGGGCAGACCGGAGTCAGCCAGGTGCTGTCGGAGTCCTCCACTGCTTTGGACGCCCTGCTCTGTGCAGTGTCAGAAATCGGCCAGCAGGGCGGCGCTGGAGAGACGGAAATCATCACAACCGAGCAACAGGTCCAAACCCAGGTGGAGGAGCACGGGGAGGTGCAGGTGTACGGGGAGGTAGTCGAAGGTGTTGAAGgtgagggggcggggtcagtAGGCGTGGTTACGCAGGTGGTCGGCCACGCCCACCAGGACACACCTGAAGAGGTGGTACAGGAGGTGCTGCAGTTCGCTGCGAGCCAGTTGATGATGAAGGAGGGGCTGACGCAGGTCATCGTGAATGACGAGGGGACACATTACATCGTAACAGAGCTGGACGACTCCACCCTGCAGGTGGAGGGCGCTGTGTATGCACACAGTGAGGGGGCGGAGTCTGGAGAAGTGGTGGATGACCAGCAGAGCAAGGGTGCAGTAACGTATTCACACATCAGCCTTAACCAAGAAGCTCAGGAATAAAGTGGGCGGGCCTGGTGCCCTTGGTCCCTCCTCCTTTTGCTTGCTCAGTCTGTCTGACTCCgccctcttcttctcttcttgcCTTACTAGCTCAGTAGCTCAGGAGCTGAAGCAAGCTCTGATTGGAGAGCTGTAGCAAATTCATGTTGGGTCTACTGATCATTTTCTCATTGTTTctaattaaatcttattttaagGAGTAAAATTCGTAGCTTCATTACGAATCACATCTCTTCATgaactctgtgtttttcttgttttttctttttttttatctgtaaacaGTCACAACCAAAATTATTGATGGTACGTTAACCAGAGGTTCTCCATAAAATCTatgctgtattattatttaattttttttttaacacgtctgcatataaatactttataaatacagtgtcacagtgtttgttttggttctcagtgttttgttaagtgttttaattcagaaaatcctctttggtttgttttgcaTGATATGAAACGTCTCTGAGTCAAATGCAGCCAATGTTCAGTGGTGGACTCTCCAAATCACACTGACCTTCTGTTTAGTACAACTTGGCTATCAATGCTTTTCAATAAATTTGAAGCTTATTAAGTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114313 lncRNA upstream 20386 30912883 ~ 30922290 (+) True G84881
TU114314 lncRNA upstream 27338 30912883 ~ 30915338 (+) False G84881
TU114354 lncRNA upstream 43497 30897919 ~ 30899179 (+) True G84906
TU114307 lncRNA upstream 136934 30805201 ~ 30805742 (+) True G84877
TU114297 lncRNA upstream 171593 30770601 ~ 30771083 (+) True G84870
TU114481 lncRNA downstream 58869 31050410 ~ 31050652 (+) True G84997
TU114482 lncRNA downstream 59286 31050827 ~ 31051026 (+) True G84998
TU114510 lncRNA downstream 251938 31243479 ~ 31259853 (+) True G85020
TU114512 lncRNA downstream 255807 31247348 ~ 31253592 (+) True G85021
TU114517 lncRNA downstream 270008 31261549 ~ 31264054 (+) True G85026
XM_007231650.3 mRNA upstream 4248 30922969 ~ 30938428 (+) True LOC103044961
XM_022673164.1 mRNA upstream 49992 30883308 ~ 30892684 (+) True rpp40
XM_022673165.1 mRNA upstream 49992 30883308 ~ 30892684 (+) False rpp40
XM_015600848.2 mRNA upstream 195813 30713610 ~ 30746863 (+) False LOC103037625
XM_015600856.2 mRNA downstream 38470 31030011 ~ 31049206 (+) True tshz1
XM_022673168.1 mRNA downstream 162068 31153609 ~ 31238682 (+) True znf236
XM_022673169.1 mRNA downstream 162068 31153609 ~ 31238682 (+) False znf236
XM_022673170.1 mRNA downstream 162897 31154438 ~ 31238682 (+) False znf236
XM_007231661.3 mRNA downstream 397910 31389451 ~ 31410793 (+) True LOC103047815
LOC107197844 other upstream 1863778 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1898937 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1901069 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1917562 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1942570 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 463443 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 832045 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1207642 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1207642 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1208350 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile