RNA id: XM_007239250.3


Basic Information

Item Value
RNA id XM_007239250.3
length 1397
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC103026974
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10328968 ~ 10336716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAGAAATAAACAGGGCGGAGCTTCATTCTATATTAACCTGCACACTTTGTGATAGTTACACAGGCAGGTCTTCAGGACTCCAGGAGATCAGTCAGAATGAGGGTGCTACTCGCTGTCGCCGCTCTTGTGGTCGTGGTTGGTGCAGCCAGTGTCTCAGAGGAGGACCAGGAGTTTGAATCCTGGAAACAGGAGCATGGTAAGAGTTACAGTTCTGAGGAAGAGGAGTCTCAGCGTAAGATGAGCTGGCTGACCAGTCGTAAGCTGGTTCTGGAGCACAACAAGCTGGCTGACCAGGGCCTTGAGAGCTACACACTCGAAATGAACGAGTTTGCAGACATGGAAGACCAGGAGTTCCAGGACATGTACACCGGCAGCCTGGATTCTATGAACGACACCGAGACCGACACCCTCTGTACCGCTACATTTACGCCAGAGAATGAAGAGGATACTCTGCCCTGCAGAGTGGACTGGAGGCAGGCGGGATACGTGACGGGCGTTAAGAACCAGAGGTCCTGTGGCTCCTGCTGGGCCTTCAGTGCGACGGGGGCCCTCGAGGGTCAAATGTACCGGAAGACAAGGCAGCTGATACCCCTGAGTGAGCAACAGCTGATCGACTGCTCCGGGAGATATGGAAACCATGGCTGTAAGGGTGGTTTGGCAATCCGGGCCTTTAGGTACGCCATGCACAGAGGTCTGGAGGCAGGATACAACTATCCCTATAGGGCCAGGAGGTCCAGAAGATGCCACTTTAATCCATGGAAGGTTAGGGCTACCTGCCGCGGCATAGTGTGCTTGCCCAGAGGAAATGAGAAAATACTGAAGTTTGCTGTGGCCAAAATCGGACCGATTTCAGTATCTGTAGACTCCTCCAGACGCTCCTTCAGGCTCTACAAGTCAGGTGTGTATAACGATCGCCGCTGCAGTAACCATCGCATGAACCACGCCGTCCTGCTGATTGGTTATGGCAGAGCAGGAGGAAGCAGGCGTTATTGGCTGGTGAAGAACAGCTGGGGAACTAGGTGGGGTGAAAACGGCTACATTAGGATGTCCAGGAACCAGAGGAACCAGTGCGGCATTGCCACAAGACCCGTCTTCCCTATTGTTTAAAGATTAAAGAAAAAGCCGAAGCAGTGATGAACATCTCTGGAAAGAGGCTTCAGTCTTACCACAATGATCATATCCcatgcagcagaagcagcaaaaaaaatatgctattttatactatatcttttttctttaatgtcCTGCTTTTACGTAATTCTTTCTCTATGATCAGCTGTTGAGAGaaagcagcagtattagctAGACCACCAGAGACCACCATCCTctctcttttaaaataaatgtaaaagtgttGTATCCAAACTTTAACTATAATAAACTTTCAGCATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106712 lncRNA upstream 136753 10189740 ~ 10192215 (+) True G79179
TU106726 lncRNA upstream 163324 10160728 ~ 10165644 (+) True G79193
TU106716 lncRNA upstream 197651 10131019 ~ 10131317 (+) True G79183
TU106705 lncRNA upstream 215647 10110776 ~ 10113321 (+) True G79174
TU106706 lncRNA upstream 215685 10107630 ~ 10113283 (+) False G79174
TU106914 lncRNA downstream 8800 10345516 ~ 10348155 (+) True G79341
TU106919 lncRNA downstream 51688 10388404 ~ 10391520 (+) True G79345
TU106900 lncRNA downstream 64778 10401494 ~ 10423882 (+) True G79334
TU106960 lncRNA downstream 115694 10452410 ~ 10468725 (+) True G79379
TU106962 lncRNA downstream 119590 10456306 ~ 10468725 (+) False G79379
XM_007239249.2 mRNA upstream 36675 10282665 ~ 10292293 (+) True LOC103026492
XM_007239248.3 mRNA upstream 76473 10242588 ~ 10252495 (+) True LOC103026171
XM_007240767.3 mRNA upstream 388962 9883006 ~ 9940006 (+) True LOC103029457
XM_007240769.3 mRNA upstream 509523 9766166 ~ 9819445 (+) False greb1
XM_015603051.2 mRNA downstream 15698 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA downstream 15698 10352414 ~ 10361816 (+) False LOC103027561
XM_007238109.3 mRNA downstream 201363 10538079 ~ 10553208 (+) False LOC103025860
XM_022672473.1 mRNA downstream 327742 10664458 ~ 10666674 (+) True LOC111193128
XM_007238106.3 mRNA downstream 391132 10727848 ~ 10764714 (+) True LOC103024809
XR_002650310.1 other upstream 774440 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1779000 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1779000 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1791286 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2599967 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 470655 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1217966 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1564379 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1728128 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3589153 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile