RNA id: XM_007240478.3


Basic Information

Item Value
RNA id XM_007240478.3
length 2744
RNA type mRNA
GC content 0.42
exon number 17
gene id srp54
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23242171 ~ 23248849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagttagctagctaattttcGCTGTAGCGAATACACTAGCAGCCACTGATTCTAggtcagttttgttttcctgtctCTCTACACTCGTTTCTAGCTGAACAGGCTGAACGAATAATAACTGACTCCAGATCAGCGCACTGAGTCCCAGCGTTACCTCGGAAGTAGAAAGGGTTTATGGGAGTTTTGTGTGTTAGCTGACGTCTGCCTGCTTTCTACTGAACCAGCTGTGTCGAAGGGAGCTAAGaacagACGGCAACATTGCAACTCATTTGCTGGATTAATCGGGTCATtcgcacccacacacacacaactacagaagaagaagaactctgAACGGGGGAATCCCCCACCTTAGCGAGGAGGTTGCCTTTGTCTAACACGTCGCCTCTTCCTAAACTGCAAACATGGTGTTAGCTGACTTGGGGAGGAAAATCACCTCCGCGCTGAGATCTCTCAGCAATGCCACCATCATCAACGAGGAGGTTTTGAATGCTATGCTTAAAGAAGTATGTGCAGCCTTACTGGAAGCTGATGTCAACATCAAATTGGTAAAACAGCTGAGGGAGAATGTCAAGGCAGCCATTGATCTTGAGGAGATGGCCTCTGGGCTGAATAAGAGAAGAATGATCCAGCATGCTGTTTTCAAGGAGCTTGTCAAGCTGGTAGACCCTGGAGTCAAAGCATGGACGCCTACTAAGGGTAAAAACAACATCATCATGTTTGTAGGTCTTCAGGGCAGCGGGAAAACCACAACATGTTCTAAGTTGGCATACTACTACCAAAGAAAAGGATGGAAAACATGTTTGATTTGTGCTGACACTTTCAGAGCAGGTGCCTTTGACCAGCTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTTTATGGAAGCTACACAGAGATGGATCCCGTCATCATAGCTTCTGAGGGAGTGGACAAATTCAAGTCAGAAAACTTTGAAATAATCATCGTCGACACCAGTGGTAGACATAAGCAAGAAGACTCTCTGTTTGAAGAAATGCTTCAGGTTTCAAATGCTGTGCAACCCGACAACATTGTGTACGTGATGGACGCATCCATCGGTCAGGCCTGTGAGGCTCAAGCTAAAGCCTTCAAGGACAAGGTAGATGTGGCCTCCGTCATTATTACTAAGCTTGACGGCCATGCTAAGGGTGGTGGTGCGCTCAGTGCAGTCGCTGCCACAAAGAGTCCCATAATTTTCATCGGCACAGGAGAACACATTGATGACTTTGAGCCTTTTAAAACTCAGCCCTTCATCAGCAAGCTGCTTGGTATGGGAGACATTGAAGGACTGATAGACAAAGTGAATGAACTGAAGCTTGATGATAATGAGGAGCTGATTGACAAACTCAAACATGGCCAGTTTACACTCAGGGACATGTATGAGCAGTTCCAGAACATCATGAAAATGGGACCTTTTGGACAGATCATGGGTATGATCCCAGGCTTTGGAACAGATTTTATGAGCAAAGGCAATGAACAGGAATCTATGGCCAgattaaagaaactcatgacCATAATGGACAGCATGAATGACCAAGAACTGGACAACAAAGATGGTGCTAAGCTCTTCAGTAAGCAGCCAAACCGGGTTCAAAGGGTGGCACGAGGATCTGGAGTCGCCACTAGGGACGTGCAGGAGCTCCTCACACAGTACACAAAATTCGCCCAGATGGTAAAGAAAATGGGTGGCATTAAAGGATTATTTAAAGGAGGGGACATGTCAAAGAACGTTAACCCGTCTCAGATGGCCAAGTTGAACCAGCAGATGGCGAAGATGATGGACCCCAGAGTGCTCCACCACATGGGTGGAATGGCTGGACTGCAGTCAATGATGCGGCAGTTTCAGCAAGGGGCCGCTGGCAACATGAAAGGAATGATGGGATTCAACAACATGTGAACTTTAGAGCCTTAAATTAAAGATGGCAAAGAAAACAACCGGATGGTTTTTAAGATGCAAACTTGAGTGAAGgaaggtttgttttttttgcctcaaatattgtaattaatcaAACCACGTCAAATATTCAgaggcttatttatttattaagcctaTTTTTCCTGAGGAAGCCTTGGCTATACAAACTGTTTGACTGGAAGGTTTGATCAATGAGAAGCATGTATATTGAAATATGTTCAGCTGTGTCTAAAGCCATTAGGCTGTAATGCTCAAATCAggtttatcaaaaaaaaaaattgttattattatttttttttttaccagatcaAATTTCTGTGTTCAGACAAGCAGTCAGCGTGCATTTGTGTGCTGAAGTGGCAGTGTTGATATGTAAAACTGGTCTAAATTTTAATTGGCAAGTTCTAGTTAAATCTGTAATTTGTAGACTGTGCAGAACAATTAAATGTTTACAGGAGAATTCTATGATTTTGTGGAGAGACATTGCTGATTACCACATAGACTGAcagagacacatacacacacagacatgttaATTGCCAGCCATTGGCTTAGCTTCTTTTACCACAtataaaccaaattaaaaaaaaatacagattctGTGATTTATTCTTCCCCTTAATTGTGATGGAGGTTCTTACAGACGGAATATCTGAGCGATCGTggttaattgtgtttattttttttctgaatttgccATAGAGAAGCTTTGGCTTTGTATCTGAGACAAAACTACAGTAGTGGCAGATTAGTCTGTGGCAATATTTTgtcataacattataataaatttaTATAGCAACATTTTAA

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048500 signal recognition particle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03106 SRP54, ffh; signal recognition particle subunit SRP54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111319 lncRNA upstream 15261 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 33372 23208495 ~ 23208799 (+) True G82596
TU111297 lncRNA upstream 36727 23204815 ~ 23205444 (+) True G82588
TU111288 lncRNA upstream 47881 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA upstream 77108 23164013 ~ 23165063 (+) True G82583
TU111497 lncRNA downstream 224355 23473204 ~ 23473455 (+) True G82748
TU111516 lncRNA downstream 249870 23498719 ~ 23499013 (+) True G82754
TU111515 lncRNA downstream 250187 23499036 ~ 23552919 (+) True G82753
TU111526 lncRNA downstream 332299 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 341651 23590500 ~ 23590893 (+) True G82766
XM_007253775.3 mRNA upstream 87586 22857844 ~ 23154585 (+) True npas3
XM_007253777.3 mRNA upstream 397793 22711082 ~ 22844378 (+) True akap6
XM_007253783.3 mRNA upstream 550011 22686731 ~ 22692160 (+) True LOC103036290
XM_022672943.1 mRNA upstream 579044 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 604378 22627304 ~ 22637793 (+) True edrf1
XM_007240480.3 mRNA downstream 1811 23250660 ~ 23267862 (+) True sec23a
XM_007251888.3 mRNA downstream 60196 23309045 ~ 23312366 (+) True clec14a
XM_007251890.3 mRNA downstream 116582 23365431 ~ 23368635 (+) True foxa1
XM_007251896.3 mRNA downstream 205152 23454001 ~ 23473086 (+) True tyro3
XM_007251893.3 mRNA downstream 226410 23475259 ~ 23498557 (+) True LOC103028567
TU111323 other upstream 10853 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 884036 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3568533 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3576124 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4311417 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 626590 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 626590 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 660833 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 890540 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 1057762 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile