RNA id: XM_007244588.3


Basic Information

Item Value
RNA id XM_007244588.3
length 4119
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC103021501
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12989731 ~ 13021102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCAATCCAAACAAACActcctatatacacacacttatacacactcgtacacacacgCAGTCTGCAGCATCCAGGCGGGCAGTGGGCTGCAGTAATGGGAAGGTGTCTCTGTAGAATGAAGATGACACTGGAGAAGCCGAGGAAGATGCGTTCGGCTCGGCGAGCGGGAGGGCAAGGCTACGTCATTCGTTTGGTCCATTAAAGCCCTCCAGGGACTGGCCTGCTTCTAGACCCGGAACCAAGAGCAATGGACTGCAGACGGCAGAGGGACAAGACCAGAGCCGGCTACTTCGGCAGTGTGAAGAACAGACTGGGCACTAAGCTGCCACCAGGAGTCACCCAGCCTCCGGGTTTCGTCACAGGGCCATGGGAACCCACCTCCCACCCAAACGGAGCTCGGAGCGTTCTGACCACTGCAGAGGGCAGCGCTGGGCGGCATCACATCCGCAACCCCAAACTGAGGCAGTACTACCTTAAAGAGGCTGCTTTCCCATCTGAAACAACAAAGACTCTGGAGTCACCGAGTGAATCAAACAGCAGAAATGAACAGGGGgttcATCAGGAAGACACAGTGTTCAGTGTTGCCTCTCAGTTCAGTGGCAGATCAGCTGTTGTTTCTGTCCCCACAATCCCCAGCTCTGCTGTCTCAGCCACACAGctcctcctgCCTCAAAACAAGGCCTCCTCCACCCGCAGACCTTCTCCTGCAGCGCCAACAATGACCACGCCTGACCTCTGTCCAGGTTCAGAGCCCAGGCTGAATGCTGTGACCCCTCCGACCCCTGTGTCGCCTTCAACAGATGCAGAATACGACAAGCTGCTGGACGTGGAAGCTGTGCCAATGCCTGATGGAAAGCTCTGCCTATTGGCTCTCCCACCTGAATGCACGCAGGGGGAGGGGCCAGCTGACATGCCTTACCTCAAGTTATTCTGTCGTTTTATCACAGATCGGAAAGGCGTGGTCTCTGGGATACTGCTGGTGACCCCCAATAAGATCTTCTTTGACCCTCATAAGTCCCTCCCGCTGGTGCAGGAGAACGGCTGTGAGGAGTATTTGTTTTCTTGCTCTGTGGACGACCTGGTGTCGGTCAGCATCATCTCTGACATCTCCCATGTCCACTTCAACAAATCCACACAAAGATGGAAAGATCGCAAGAAAGCTTCAAAGGGCAGAACCTCAAAAAATTCAGCCGTCGACTCTCAGAGTGATGCTCACAGTGTCACTCTTCAGTCCAAGATGGAAGCCGCTCCCACGATGAGGAGGTCCATGACGTGGGACATGCAGACAGCCCTTGGGACAGGCCCGGAGGCGAGCCATGGCGAGGATGAGGGTGGAGAGAGCCAAGACATGGCTGAGGTGGAGCAGCAGCTGGGGCAGTTCAGTCTGGAGTCCACCGTGCTGAGCAGCGCCGCCACCTTCTGCTGTGGAGCAACCAATGCAGAGCTGGAACAGGATGCTAAAACAGAGCAGCAGCCGTGTTTGAAGAAGCAGATTTCAgGCCGGGGTGCTGCCAGCTCCCTGATGTTTGTGAGGATGCGTCAGAAGCAGCAGGCTGTGAAAAAGAAAGGATTTGCAGCGATAGACCTAGGCAAAACAAGAGCTGGGGCTTCCAGAGACGCCTGGTTTACCCTGCAGCAGGAGAGTTCAGATGAGCTGTATGCCTACCTAAGTCAGCACAGGCCGGACCTGTGCATCCTGGAGGGAGGTGAAGAAGAGCAGGCGGAGAGAGACGAAGACGACTTTGTGCTTCTGGATGATGGAGAGGGAGGTGggggagaagaaggagaagaggaggaggagtctCCTAAGCACGGGCGCAACGGTGATGAGTGGGAGATGGTGAGTGTGGAGGACAGCAGGGGGAGGGTCTCCTCACTCTCTGCAGATAAAGAGCCGGACGGAATGAGTGACATTCTGAGGCAGAGCCTTATACTGGATGCACAGCAAGTCAGAGAGcTCTCCAGTGAGTTGCCACCACGAACGGTGGGTCACTCGTGGAAGCTGGCTTACAGCACGAGTAAACACGGTGCCAGCCTCAAAACCCTGTACAGAAAACTGAGTGTATCAGACTCTCCTGTTCTTCTGATCATCAGAGACGACAACCAGCAGGTGTTTGGGGGTTTCCTCTCTCATCCGCTGCGGCCAAGCGACACCTTTTACGGTACAGGAGAGACATTCCTCTTCCTTCTGCGTCCTCGCTTTAAGtgtttccacTGGACTGGAGAAAATTCCTTCTTCATCAAAGGAGACCTTGACTCTTTTGCCATCGGTGGTGGAAGTGGTCACTTTGGCTTGTGGCTGGACGAGACACTGTACCTGGGCAGAAGCAGCCCGTGCTACACATTCAACAACTGCAGCTTGTCTGAGACCAGCGACTTCAGGGTGTTGGAACTGGAGGCCTGGACCTTCTGGTGATCCGGTGGAGCACACAGCAGCCCAATTCTCAAAGTCTCAAAACACTAAGGGCTTCGTTTGATGAATATTGTGGACTTTGGACATTGTTGAACATCTCTGAGAGGTTCTTTAAACAGAGGTTGCAAAAAAAGGCATGCAATACTGGAAACTACCTAAAAAGTGAAGACTCTTCATATTGAGGATGTGATCTTCATAGGTCAACACCAGGCCAAGATGCTATCACCACAAGTAGAATGATGAGTCTTGGACTTGGGGCTAAAATGGAGAACTTGGCTCTTGTGCATAAAGAGACAACTTAACTGGCTATAGATAGTTGATGGCACCGGAATGAAGGATCAAAGTGGTTTTGTACTGTGATGGTAAGAAGCTCATCAATCTGGAATCTTCAGTTGTGATGATCTGACTGTGTCTCTGGAGTAAAGTGCTTCATGATAGTCAACTTCTCATTGCTTTTGGAAGCAGACGTTCATTCAACTAATTTCCATCTTTACAACCAGTGTTTTACTGTCTGAATGGCTCCAAATGACCTGCACATCAATCAGCTGCCTCAGCTCTACCATAAATGCTGCTTTAGTGTTTGGTTACAGCTGCCTATGTTTAGAATAGGATGTTCTTCAGCTCCCAAAATGTCCTGAGGCCAATTCAGAATCTTCTCCGTTTTATATATGAAACCTGGGAGGTTCTTTAGCTCCTGAAATGTCCTGAggacaatatataaatatcactATCTTGTCTGAAACCTGGGAGATTCTACTGAACCTATAATGCTCTGAGGCAAATTTAGAAACTTCACTATTTTGTCTGAAACCCCTGGGACATTTTTTAGCTTATAAAATGTCCTGAGGCCAGTTCAAAAACTTGTCAATATCACATCTGAAACCTGGGAGAGTCTTCAGCACGTTAAATGTCCTGAGGCTAGTTCAAAAAAGTCAAAAGTCTGAAACCTGGGACGTGCTTCAGGACCTAAATGTCCTGAGAATCCATTAAATATTACATCTGAAACCTGGGATCTTCTTCAGCTTCTAAAATGTCCTTAGGCTAATTTGGAATCTTCTCCATATTACATCTGAAACCTGGGATGTTCTTCAGCACCTGAAATGTCCTAAGAACAACATATAAAGATCATTATCATGTCTGAAACCTGGGACATTCTTCTGCATTCTTCAATATCACATCTGAAACTTAAGATGTTCCTCAGGTTCCAACATTTCCTGAGGCAACATCAGAAACTTCACTAACTTGCCTAAAACCTTGGGATAATCTTCAGGTCCTAAAATGTCCTGAGGCTAATTCAGAAACTTGATATGTCAATATGTCTGAAACCTGAAAGACCGATAATGTGAATGGCTTTTTGCCTTTATTGCACTTAGTGGATCCCTCAGCTTCGACTAGCactaaatctgtgtagatcgtGCACACTGGCTTACTAACACACTTCCTGTCACTGTAAAACTATTGGTCCACTGTAGACGACCACATATAAAAACATCTTACCACTTACTACAGATGAAGGATTTAACTTTTTGGCCCAGGATTGTCAAACATACAGAAGCTAGAAAATAATGTGTCTAATGTTTAGTACCtctgttggtggtggtggtcaGTGAGTTATCCATGCACAAACTCATCTGTTTATGCACCATCCATACATGCACATCACAAAAtcaatattataatgtataataaaattaatgtgaagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108011 lncRNA upstream 1889 12987463 ~ 12987842 (+) True G80176
TU107996 lncRNA upstream 32391 12955316 ~ 12957340 (+) True G80166
TU107964 lncRNA upstream 103150 12875773 ~ 12886581 (+) True G80138
TU107960 lncRNA upstream 103150 12884554 ~ 12886581 (+) False G80138
TU107962 lncRNA upstream 110474 12875773 ~ 12879257 (+) False G80138
TU108022 lncRNA downstream 28693 13049795 ~ 13051000 (+) True G80186
TU108027 lncRNA downstream 69843 13090945 ~ 13094064 (+) True G80189
TU108035 lncRNA downstream 101260 13122362 ~ 13124594 (+) True G80197
TU108043 lncRNA downstream 121983 13143085 ~ 13143493 (+) True G80202
TU108046 lncRNA downstream 125155 13146257 ~ 13147139 (+) True G80205
XM_007244586.3 mRNA upstream 3130 12971431 ~ 12986601 (+) True LOC103047786
XM_015604607.2 mRNA upstream 168928 12809667 ~ 12820803 (+) True LOC103025054
XM_007244580.3 mRNA upstream 241707 12741359 ~ 12748024 (+) True LOC103046040
XM_007244578.3 mRNA upstream 410499 12565112 ~ 12579232 (+) True LOC103045432
XM_007244576.3 mRNA upstream 440641 12533857 ~ 12549090 (+) True exo1
XM_007244591.3 mRNA downstream 34830 13055932 ~ 13062962 (+) True morn2
XM_022672738.1 mRNA downstream 39466 13060568 ~ 13062962 (+) False morn2
XM_022672739.1 mRNA downstream 44840 13065942 ~ 13084209 (+) True arhgef33
XM_022672740.1 mRNA downstream 44840 13065942 ~ 13084209 (+) False arhgef33
XM_007244593.2 mRNA downstream 130147 13151249 ~ 13163591 (+) True ecd
TU107455 other upstream 913520 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 1084346 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 1434592 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 2176261 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 3435203 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 904767 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 1704825 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 1767500 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2153893 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 2542885 15563987 ~ 15583331 (+) True G80857

Expression Profile