RNA id: XM_007244645.3


Basic Information

Item Value
RNA id XM_007244645.3
length 2507
RNA type mRNA
GC content 0.49
exon number 13
gene id eno4
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15682373 ~ 15704118 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGGGCAACTGCTGGACTCAAACAGAGCGGAGAGCGGAGCGGCGCGCGGAGCCGCAGATCCAACATGTCTTATAAAAGCGCTTTAAAAGCCGAACAGGAGCTGTACGAGCTGAAGAGCCGAGCGGCGGAGTATTACAGAGCCAACCGAGTCCCTCACACCCTGGAGGAGCTGCTAAACCAGCTGTTTGCGGAGAAACCCAGTGATATTTATGGATATATGGCGAATTACTTCTCCAGGTTGGCTCACACACCTGTGATCAGTTCCATAGCAGGGAGAGAGGTGTACGACAGCAGAGGGGAAGCAGCGCTGCAGGTGGATGTGTACTGCATGGTCAGGAATGAAGAGAAGttaGTGTGCAGTGCAGTAAATACTGGCCTAGATGAGCATAGGGCGGAGTCAGGGGATGCGGTTGCTGATGATAACCATCAGCAGGCATCTGTGGCGACGGCTCTGGAGTGGATCAGAGAGCAGCTGAGCTCCATGCTTTGTGGCTTTAACCCCGCCCACCAAACGCAGCTGGACAAAGTAGTCAGtgattTCCTTATGGCTCGCTACCTCGAGGAACAAGATGCTCATAATAGCAACATaaagagtgaggaagaggagaagaagattGAAAGAGCACCTGAGGCCACGCCCCCTCCCCAACCTGCTCAGAACAAAGacaagaaaggagagaaagGTAAGAAGAGAAACAGTGTGGAGAAGTTGATTCCCCCTCTGGACCCGCCACCGCCCGTGCTGCCTGGGGCAGTTGTGGCAGCTGCTGTGTCACTGGCAGCAGCCAAATCTGCGGCGAGTCTCACAGCAGTTCCCCTCTACAGACACATCATCACTCTCAGAGACCCGCAGGCTCTGAGTGCTGTCTTCATGCCCATACCCTTGCTTACAGTGTTAAGCTGTGGAAAAGCATCAGCAGGGAAACTCAACTTATTGGAGGAACTCATCCTGCTGCCCACCAGGACATACTCAACCAGAGAAattgtagTGATGGGTTGTGAGCtccagagagaaataaagagaatatccacctccaccaccactaGTAAAACTGGGccTGCAGTACTGGGTGTATCTGAAGGGGGCGCTCTGCAGCTGAGCTTGGAGCGCTCTGAGCAGGCTCTCGACCTGCTGATGGAGGCCTGTGTGAATCTGAAGCTGCCGATGGGCACGGAGCTCCGGCTGGCGATAAACTGCGCCGCTCACAAACTCATGGACTATGCAAAGGGGAAGTACGAGGTGATGGCAGGGACGTTGAAGTCTCCGGATGAGCTGGTGGATATGTATGTGGGGCTGGTCAGTAAATATCCATCCATTGCAGCCCTCATCAATCCCTTCAGAAAAGAGGATGAGGAACAGTGGCTGAAGCTAAGCTCTCTGATTGGCCACTCATGTTGCCTGGTTGCAGATGCAGCCTACAGTCCATGCTGGAGGGATGCTAAGCCCCTCCCACAAGGAGTCACATGGGTCACTCTTAGACATGGCAGTGAGATGACCCTCACTGACCTCCTTCACACCGTCTCACAGAGAGCAGGTACAGATGGAGAGACGATTCTAGCAGTGAGCAGTGAGGAGATTGGTGACGACAGTATGGTAGATGTGgctGTAGGTGTGGGAGTGACGTTCATTAAGTTGGGGGGTCTGAGTGGAGGGAGCAGGATGAATAAGTACAACCGACTACAGAGCATAGAACTGGAGCTTCAGGAGCAAGGCATTCTGGGGATGCGCCAGATGAAGTTGCCGTGGGAACAGGAGGAGGTGGAGTTAAATCCAGAGGAGGCAAACTTAATAGGTGCTGAACAGGTGACCAGCAATTGACCCGTCCACATGTAATGAACCAAAACACAAGAGATCTCAACACAACTTCATCTAAACCGTCTGAACATTAATTACTGTAACTCCTATAATATACCCATACTAATATAGAACatgtaatattaaataacaTACAGTGTATAATCAGCATTATTAGCAGATTTGTGTATCTacattgacatgccaaaagtcacgggacagcagtatgtgttTAAATTGACTAAAAAGTGGCAACTAACCTGCATAAGTTGTCTTGTAAGAGAGAGTGAACAATGGCAGTGTGCCAAGGTGATGTGAATtttgggagttggagtgagtagtaatgatggtgaccagtGGCATCTGGCTgaaattgtccatgtgaacagcgttctttagcttccacgaaacatggcaaaagtcacgggacaccatactagttcctgtctcatgagatttggcatgtcagtgtgttttctcATTTTGTAGCAAGAATGACTCAAATGcttgaatataaaatattgttgaTTCTTTAATGTATTTCACACTTACATCAATATTTACAGTGCAGTCAGCCACAGACATTTAACACAGTCTCTTTTATGTAGAAATGTCTTTACTGTATCATTGCATTGCAAGTGCTGTTCTGAACTTATGCAAGGGAAGGTCCTGAGTTGGGTAGAAATTTGATTGAATATTCGTTGGGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108912 lncRNA upstream 17420 15664746 ~ 15664954 (+) True G80869
TU108911 lncRNA upstream 50816 15631168 ~ 15631558 (+) True G80868
TU108910 lncRNA upstream 58255 15623839 ~ 15624119 (+) True G80867
TU108907 lncRNA upstream 61592 15598679 ~ 15620782 (+) True G80864
TU108813 lncRNA upstream 423027 15254414 ~ 15259347 (+) True G80787
TU108929 lncRNA downstream 5467 15709585 ~ 15711163 (+) True G80881
TU108936 lncRNA downstream 15453 15719571 ~ 15721009 (+) True G80887
XR_002650337.1 lncRNA downstream 22476 15726594 ~ 15728992 (+) False LOC111193205
TU108938 lncRNA downstream 22522 15726640 ~ 15729262 (+) True LOC111193205
TU109001 lncRNA downstream 257389 15961507 ~ 15963105 (+) True G80942
XM_022672782.1 mRNA upstream 140088 15507380 ~ 15542286 (+) True LOC111193204
XM_022672773.1 mRNA upstream 529893 15024469 ~ 15152481 (+) True wdpcp
XM_022672774.1 mRNA upstream 529893 15024470 ~ 15152481 (+) False wdpcp
XM_007244624.2 mRNA upstream 731295 14892427 ~ 14951079 (+) True peli1
XM_007244626.3 mRNA upstream 802668 14836482 ~ 14879706 (+) True LOC103032735
XM_022672790.1 mRNA downstream 160365 15864483 ~ 15891088 (+) False pla2g4f
XM_022672791.1 mRNA downstream 160366 15864484 ~ 15891088 (+) True pla2g4f
XM_022672792.1 mRNA downstream 160366 15864484 ~ 15891088 (+) False pla2g4f
XM_022672793.1 mRNA downstream 164114 15868232 ~ 15891088 (+) False pla2g4f
XM_007244649.2 mRNA downstream 193406 15897524 ~ 15920726 (+) True kcnk18
TU108900 other upstream 99043 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 500976 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 880537 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 953575 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 1730176 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2756012 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2756012 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2756012 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2756012 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2756012 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile