RNA id: XM_022672817.1



Basic Information


Item Value
RNA id XM_022672817.1
length 2328
RNA type mRNA
GC content 0.40
exon number 6
gene id ccdc28a
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16586187 ~ 16593573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AAAAAAAAGCAGGAAGTGTTTTGGGAACTTTTTTGGGCAGTGGGATGTTTTTGGTGGTGTAAGTTTACACTGAGGTAATTCTGCGATGGTGTTAATAAAGGATATCAGCGCGCTGTGACAGAAAGGTTTACAGCtggaggtaaagagagagaATTGTAACACTATGGAGGAGAGGAAGATTAAACGGAAAAGCCCCAGACCGTCGGTCCCCCAATCTGCTCCTCCAGCCACCACCCGAAAGACTGGCATTCCCAGCAGCAGATCCTTAGGATTAGGGATGGGCACCCACTCCAATCAGAAGAGCAGATGCCGCAAaggagtgagagaaaaacagagagctcAGACTCAGGCCAGTAGAAACAGCCAGACTGCTTCCATTCAGCACTCCTTCCTCACAGACGTGTCTGATGTGCAGGAGATGGAGAAAGGTCTGCTGAGCCTCCTTAACGACTTCCACTCCGGAAAGCTCCAAGCTTTTGGGAATGAGTGTTCCATTGATCAGATGGAGCATGTTCGAGAGATGCAGGAGAAGCTGGCCAGACTGCACTTTGACCTGTATGGAGAGGTAGATGAAATGCCTGAAGACCAACGCAAGGTCGCCTGTGATACCAACATGGACAAACTTCTAATGAACCTGGAGGAGTTAAGCTCTTCGATACAGAAGCTGAACCTTGCTGATAGCCAGGAAGCCCCCAGAGCGTCCAGTATTTGAAGCTCTGGATCCGGCATGAAGATCTAGTTGGTGTGGAGGGTGTTCATATCTGAAAGCGTCACCATTAACCACCTGCAGGAAGAGTAGACCTACAGGACTGGCTCACTGCACAGTTTACTACTAAATGCAATATCAAGATCACTCATAACGTTACACATCGCACACCTCACCACCTAACCATCCGTGTAGGAGCTAGCTGTAATGCATCTGTCCATCCACAGGGGTCAGTATATCCATCTTTACTTTCAAGTCCCTGTCCGTTTGAGGCTAagttagaaaacaaaaaaaggctcATTTTGGCCATTTAGTAGTAGTCAGgtgactattttttttgttgtgtccACATGTTTAAGACCTAATTACTGGAATTCtgatgattaataattaataatttagaaTAAACCAGAATAACACCAGAATCTTAACAAACTCAACAGATTAGGTGTTAATAGATATCCTGTGTCAACGTTTGTAACTGTCACAAATTCACACAACTACGTAGCTAACCCATTAGCACCCATTCCATCAGTAGAGAAATTACACATAAAATGTACATACAGCATATaagctttttattaaaacagcttaTTGCACTGGTATTTCATTAGTTTTGCTACCCAGCTAACAAGTTAGCAAACATTCCACCAGTAGATAACTCCTATATAGCATATcagctttttattaaaatagttaGCCATATGATTATTTCTTTGGCTGCAGCTACAGTGTTTATCACTGAGGGGTTGTTATTTACAGGATTAGCAGAGCGCACTGGACTCTACACTGCCCCATAAAACACGAGGGCACTGTATAATTGAACGTTTGAATTTGAAATAGTAAAGCTTCCTACTGAAGGAATGGGTGCTAATTTGTTAGCTGGGTGGTTTCTAAGCTACAATAAGTCTAGAAGGGATTATAGTAACAAAAATCTGATGGCACAATCCAACTTTACAAAATTCTAATGTTTCCTAAATTTATATTGTGGAAAAAAGATGAAAGCCCATGTCTTCTTTACACAtactaaataagaaaaataaaatcatgatgTTTTACCCACAGTTTTCTGTTTTACAATTTAGCCCCAAACAGATAACTGATctgataaatgttacactgaaccccccccccccagtggTGGACtgataatcagtatatttattgCTGAATGCCTTTGAGTTGTGCAATAtgagaacatttgcaatgtcaCTAATTCACTTTATCGaataactattttttaattctcAAGATACGAATATTTTTCATCTTTGGACCCTTTGTTATTTAAtcagtcactgtgtgtgtgtgttgggatttattaagtattttaaacccctTTTAAAACTGAAGATGCCCAAAAACCCCATTAAATCCCATCAATATTTGCCTTATTCTGAAGACTTCTCTGTcttgagtatgcagaaaaacgggtTCTGCACTCGAAAGTACCTGGAGGAATGTTATTTTCTAATATTAAAAGCCTTTGTATATTGCAGATGCacctactttattttaaaatgatttacatttctaatataacTGGTTGAATGTTCATGGTTTCTGTGGCTTGAGTTTGAGAGTGCCATCAATAAAGGTCACATGCTTCCTAATGACCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109233 lncRNA upstream 60183 16525484 ~ 16526004 (+) True G81083
TU109199 lncRNA upstream 111533 16406264 ~ 16474654 (+) True G81062
TU109194 lncRNA upstream 181219 16403332 ~ 16404968 (+) True G81061
TU109145 lncRNA upstream 190484 16392302 ~ 16395703 (+) True G81048
TU109176 lncRNA upstream 190484 16392302 ~ 16395703 (+) False G81048
TU109260 lncRNA downstream 21629 16615202 ~ 16616148 (+) True G81103
TU109262 lncRNA downstream 24114 16617687 ~ 16618124 (+) True G81105
TU109267 lncRNA downstream 26010 16619583 ~ 16621422 (+) True G81106
TU109287 lncRNA downstream 85075 16678648 ~ 16681932 (+) True G81124
TU109405 lncRNA downstream 123422 16716995 ~ 16719435 (+) True G81190
XM_007244668.3 mRNA upstream 46727 16518216 ~ 16539460 (+) True tmem121
XM_007244665.3 mRNA upstream 99789 16471855 ~ 16486398 (+) True tedc1
XM_015604620.2 mRNA upstream 118429 16463901 ~ 16467758 (+) True dnal1
XM_007244667.3 mRNA upstream 118429 16464112 ~ 16467758 (+) False dnal1
XM_022672478.1 mRNA upstream 145392 16426525 ~ 16440795 (+) True LOC111193130
XM_007244673.3 mRNA downstream 974 16594547 ~ 16608457 (+) True ect2l
XM_022672820.1 mRNA downstream 979 16594552 ~ 16608457 (+) False ect2l
XM_022672819.1 mRNA downstream 1364 16594937 ~ 16608457 (+) False ect2l
XM_022672824.1 mRNA downstream 94345 16687918 ~ 16713041 (+) True LOC103021824
XM_015604621.2 mRNA downstream 127652 16721225 ~ 16729066 (+) True LOC103022442
TU108900 other upstream 1002856 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1404789 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1784350 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1857388 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 2633989 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1866557 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1866557 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1866557 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1866557 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1866557 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile