RNA id: XM_022672820.1


Basic Information

Item Value
RNA id XM_022672820.1
length 2990
RNA type mRNA
GC content 0.51
exon number 21
gene id ect2l
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16594547 ~ 16608457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAATCTAAGAGCAGCGCGTCACTCCCAGTAAAGGAATTCCGCTGTGTTGTTTTGTTGCCATGGCAGCGCGAAGACTCCCTGAAGGAGCTTACTGAGGCTTTTTCAGGAGAGAACGACCCTGATCCTACACTGGTTTGACCTCTGGACAGACGGACAGCGCAAACACCTTCTCCACCTGCTCCTCAGAAGATGCCCAAAGTCACAACTCAAgTTCGTCAGCGACCGTTTCATGGAGGCAGTCCCCATCACTCAACTGGACTTTGTGACAGTGCTGCCCCGCTTCCTCTCTCTGTACATCCTGTCCTTCCTGAACCCTGTGGACCTGTCCGCCGCGGCCCAAGTCAGCTGGCACTGGAGATTCCTGGCAGAGCAGGACTGTCTGTGGTTGCCAAAGTGTGTCCGGCGAGGTTGGTTCCTCCCCTACAGCCCATCAGACACAGAGTACGGGGCCTGGAAACGGCACTATGTGGCCTGCGCCGCCAGCCTGGACACTCTGTACCCGCGGGAAGCTGGAGACATTTATGGCACTCTGAGTGAAAGCGTGATGGAGTCTGAAgagcagaaagaaagaagaacagAACATATCATCCGACAAACCATCTGTGGCAGGATAGCAGAGCATAAACGAGCTGCTTTGAAGAGCAGGAGGGCGTGGTTAACCAACAGCTTATCTGGTGAAGTGTCCTCCAACCAAGAGAAGTCCAGCCTGATGACACTAACCACCGCTCTGGTCCAGCTAGGGGATAAGTGCCGCCTGGAGAACGTATACAGTATGAAAGACAGCAGAGCTCAGCTGAATTACACTCTAAATTCAACAATCGATCAGACGTGGACGACCAGCTCTATGAAAACACTGCCAGTGAGGTCTTCGAAACAATCTGGTAAACATTTTCCAGTTCATTTACTGGCTTTTGCGGTCGCCAGCATCCCTGCATATGAGCTGGTGCTGGGTGGTGCTCTGGCCCATACTTTGCCACTGCTGTATGATTACAGTGGGATGACGTTGGAGGCTCTTCTCTCTCTGATAGAGAAAGCAATAGAGGGCAGAGCAGTGCAGAGTGTTGGCATTCTGACTGAAGGAAGCACTGAGGACTTTAGTCTTATAGAAGGCCTGAGCATCACTGAGAGGACGGTTGTGAAGCCGGGTATAAGGGAGTTTTGGGAAAGGCTGTGTGGCTGGGTGGTTCCTGCCTCAGAAGCTGGATCTCTGAACATCTTTGCTCCTCTGGGAGCTTCTGCTGCAGGGGTGGAGCTTATGACCAAGCTTTCCACTCTGACTGGACTGATGGTCAGAGCACCCACAGGAATCTGCACTGGCTCCTACCAACACATTCTGAGTGATTGGTCAGATCACGGCGAGTTTCCGCCGCTGCTGTACCTGCGGGTCGAGTCGATGCTGAGCTGGTGCCGACAAGCAGAACAGATAGAACAGACCCTGCAGACCCTGAGGAACCAGCTGGAGCCACAACTGCAGCTTCTGAGTCAGGAAACCAGGGGGCGCTGTTTGGGTTTGTTCCTGTGGGATTATATAAACCTGCCTGCTGTTTCTGTCAAATCTGAATTTACCCAGATTCTGATAGAGGGTCTTGTGACTCTTACAAAAGAAACACCGGATAATCCACTGCAGTTCCTTGGAACGTTCCTGCTGAAGAACTGTGTGGAGAGCAGCGTGGAAAAACCTGAACCCATCACTCTAACAGAAAACCCCTCCCACAGCTTCCTCAGCTCCTCCCCCAGAATCCCAGAGGGTGGTGGGTTTGGTGCTGCAGGTCAGCGGGAGGTGGTGTGTTTGGAGATTCTGAGGAGTGAGAAGGATTATGTGCGGTTACTGCAGGCTGTAAACTCTGTGTACTACAGTCCACTCAGAGCTGCTCTGGACTCCAACAGGGCCatcatctcctccaccagcctccTCACGCTCTTCTGCCCCCTGCTGGACATCCTGGCAGCCAACAGGGTTTTTCTGCAGGATCTTTCGGAGAAGCTGGAGGAATGGAGTCCTCTGCAGTGCTTGGGGGAAGTTTTCGTCCGTTTCTGCACCAAATTACGCACTTACACCAATTTCTTCAACAACTACCCGACTACTATCAGGACCATAGACACGTGCAGAGAGACACTTCCTGCATTCCGAGCTTTTTTAAAGAGGCAGGACCGGACGCTGGCCACTGGAATGTTGAGtcttcaggagctGTTTCTGAGTCCGTCCACGCGAGTGGAGGAGTACGTGACTTTACTTCAGGCTCTACTGCTGCAAACCACACCTGAACACCCTGACCACGCCCACTTAACCTCTGCCCTCAACACACTGCTCAACTACAGGAGCTTCGTACGCAAGTTGAAAAAGAGTTCCAGTCAAGACCTGAGAATGCTTGAAGCTCAGCAGAGGATCCAGAGCTGCCCAAACCTTCAGGAGGAAGGCCGGTACCTGATCACCACGCAGGACGTGGTGTTACTGAACTGCCTTAATGAGGACATTACTCCATCCCTCAGGATGTACGAGTGTGTGGGTGAGCTGGGTCTGGTTCTGTTTAATGATGCTCTGGTTCTGAGTGAGAAGAGACGGACCCACAGGCCCTTCAGCTCCGCCGTCAACATCTCCTACACCTTCCTCGCCTCTGTCGCTCTGCACAGCCTCAGCCTATCAGAGATGCACAACACCAAGTATGTGCAGAACACTTTTCTTCTGGAGAGTCCAAAGCGCCGGTGGATCTGTTCCACAGAGCGAGAGCAGGACAAGATCAGATGGTTGGGGGCTTTACGCAGTGCTATAAATGCAGCCAATCACAATTAACACTAATGGCATGATGTTGCCTTCACGCAGCAAACCATCCTTGGGTTATTACACTATTTTATACagtaccttattttttttatgtgtttttatttttattttatttttagtataatGTTACAGCGCATATCTACGTTCAATGCAGTGAGGTGTTTTGTATAAGTgggtcaaaaataaaaacaagtatatgtgcaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109233 lncRNA upstream 68548 16525484 ~ 16526004 (+) True G81083
TU109199 lncRNA upstream 119898 16406264 ~ 16474654 (+) True G81062
TU109194 lncRNA upstream 189584 16403332 ~ 16404968 (+) True G81061
TU109145 lncRNA upstream 198849 16392302 ~ 16395703 (+) True G81048
TU109260 lncRNA downstream 6745 16615202 ~ 16616148 (+) True G81103
TU109262 lncRNA downstream 9230 16617687 ~ 16618124 (+) True G81105
TU109267 lncRNA downstream 11126 16619583 ~ 16621422 (+) True G81106
TU109287 lncRNA downstream 70191 16678648 ~ 16681932 (+) True G81124
TU109405 lncRNA downstream 108538 16716995 ~ 16719435 (+) True G81190
XM_022672817.1 mRNA upstream 979 16586187 ~ 16593573 (+) True ccdc28a
XM_007244672.3 mRNA upstream 979 16586187 ~ 16593573 (+) False ccdc28a
XM_007244668.3 mRNA upstream 55092 16518216 ~ 16539460 (+) True tmem121
XM_007244665.3 mRNA upstream 108154 16471855 ~ 16486398 (+) True tedc1
XM_007244667.3 mRNA upstream 126794 16464112 ~ 16467758 (+) False dnal1
XM_022672824.1 mRNA downstream 79461 16687918 ~ 16713041 (+) True LOC103021824
XM_015604621.2 mRNA downstream 112768 16721225 ~ 16729066 (+) True LOC103022442
XM_022672825.1 mRNA downstream 112768 16721225 ~ 16729066 (+) False LOC103022442
XM_022672828.1 mRNA downstream 152366 16760823 ~ 16767006 (+) False LOC103031040
XM_007239267.3 mRNA downstream 152368 16760825 ~ 16767006 (+) True LOC103031040
TU108900 other upstream 1011221 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1413154 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1792715 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1865753 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 2642354 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1851673 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1851673 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1851673 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1851673 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1851673 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile