RNA id: XM_007248450.3


Basic Information

Item Value
RNA id XM_007248450.3
length 4010
RNA type mRNA
GC content 0.43
exon number 5
gene id kcnk5
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34705038 ~ 34735575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGCACGTGGCCGCAGAAAAGCTCACAGTTCAGGAGCACCGGCTCCAGCACTCTATAACACCACTAacccactgctgctgctgctgctgttgttctccACTGCCCCTGTTATTGCCCCCGTTACTGCCCCTGTCCTGCCCTGTTACTGCCCCACCCGGCCACAGTTCAGCGGGGCTCAGCGGCTCTCATGCGGATCCGAGACGGGCTTGGACCTCCTCCTCCCCCAAACAACTCGTGAGAAAGCCGGGGGCTTTGGCGCGTAATTAGAGCGGCTGGTGCTGGTGGATGGGCAGGGTGGAGGCTCCATTATGGTGGATAAGGGTCCCCTGCTGACCTCGGCTATTATCTTCTACCTGTCCATCGGGGCAGCGATATTCCAGGTGCTGGAGGAGCCCAACTGGAAGCTGGCAGTGGACCAGTACAATGACAAGAAGGAGAAGATCCTGAAAGACTACCCCTGCCTCACTAAATATGACCTGGACAAGATACTGGAGGTGGTGTCTGAAGCTGCTGGACAAGGTGTCACCATAACGGGAGATAAAACCTTCAACAACTGGAACTGGCCCAACGCCGTCATCTTCGCTGCTACAGTCATCACGACTATAGGTTATGGCAATATTGCCCCCAAAACACCGTCAGGACgggttttctgcattttttatgGACTGTTTGGTGTCCCACTTTGTCTCACCTGGATCAGTGAACTCGGCAAGTTTTTTGGTGGAAGAGCAAAACATCTTGGACAGTATCTCACCAAGAGAGGAGTCACACTGCGGAAAGCACAGTTCACCTGCACAGCCATCTTCCTGTTGTGGGGGGTATTGGTTCATTTGGTTATTCCTCCATTCGTCTTCATGTCTCAAGAGGGCTGGACCTACATAGAGGGGCTGTACTTTTCATTTGTGACTTTGACCACTATTGGATTTGGTGATCTTGTAGCAGGTGTGGACCCTAATGCAGACTACCCGACTCTTTATCGCTACTTTGTGGAGGTGTGGATATACCTAGGCTTGGCTTGGCTGTCTCTCTTCTTTAACTGGAAGGTGCGGATGGTCATCGAGGCCCACAAGGCTCTGAAGAAGCGGCGGAAGCGGCGCAAGTTATCGCTGGACGAGCTGCGGCACTACAAAGAGAACCACAAAGCCCTGCACCTGCCAGCCAACGGTAACGAAGTCAACATATTCAGCTTCCTGAGCAAGAGACCGGAGGGCTATAACGACCTCATCAAGCAGATCGGCGCCAAGAAGGAAGGAGGAGGACAGTGTGCCAATGGCGTCGCCGGTAACAAGTCTAAAGAATTCAGCCGATCTAAAAGCTGCAACGATGCTGTTCCTCTTAACGGAAATACTATTCTTAACCTGGACCGATCTCCTCGGCAAAAACGGCGCTACAGCTTTAGCGACCGTGTGACTGTGGCCTTCTCCAAGTCCAAGAGTTACCTGCTTGGGCAGGAGGGAGGACCTCTGCTCAACGAGATGCAGGGTGATGGAGATGTGGAGGCAGACCTTGGAAGAATGTACGAAAATCAGTTAGATAAAGAAGCGGGCGAAGAACATCGAAATCTTGGACCTGGAGGACAGTGCAACATGTGGGAGTCCAAAGAGTACCAGCCACTCATCTTCCCCAATGCCAACATCACCTTCATCGACGAGGAGAATCTTCTGAACAACAacctggaggaggaagaggaggatgatgatgatgacgacaCAAAGCCTAAACTCTCAACGTCTGACGAAAACGTCGAATCAGAGACCGATTCCAAAGAGGAGCAGTGCTCCGAATCTGACGGCTCCGTCTTCACGGACAGGTCGGATCACTGCCACTCCTACGAGCAGCTGGTAGAGGAGTACTCCAAGGAAGAAAACACCGAGACCTGACCTAAGACCTGAGTTATACCGGTTGAAATCATGGACCTataaaaaccacaaaaaaaaaaactctcagtGAGAGTTTACTGTGTTATATTCttccttctcttttttgttgttgttagttTTGGTAAATTCTGGACATTTTGCACAAACTTGAAgacgtttttttgtttctcatgcCAGACTTGATCATACAAGCATCCTTGCATTCTTCCATGTATGTGAAGCATCACAAAGGTTTTGTTGGTGATATTCTCATCAAAATGGAACTGTGAAGTGCATTTCAGTCAGTATTACATCAAGATAAGAAGCTGTGGACAGTTTTGACCAAAACAAAGCTAAACATCCACAgtttattaaagcagcagtccctaagatttttaatttgagGAGTTGTGAGGGaacaaaacattcaaattaaTGCTATCAGTGTCCTGGCATGAGCAGACCTAACAAGAACTAATACAATATATTCATTCTGTAAAAGAATTAaaagagtggtctggtaggtttgttggatttAGATGCTCTTTACATTTTGACAGTTTgtcataaattaaaaacaattgaaCTAAGCGATAtgctcaaaaacacaaaacttagcctaaattaaattaaaagtactattcaacatgctctgtgcaattacacacttTCACCacagaggtctctaaatccccaagtGCCCAAAACCTTcggactgttgctttaaaattCCTGTACGCTGACTCCATAAAAATGGTCTAGATAGATGTTTTTTATAGATGTTTCTAATGAAGACTTCTTGATAGTTGCCAAGTTATGCAGGGGTTTGTTTCTAGTATTGGAATAATATAGCTGTAATTTATTAGATTAAGTTAGATTAAGAAACACATTAGTCTGAATGAAATGAACTGCTGAATCAGTTGTAATGGATCTGTGGGTCATAGGATGGATAGGATACAAGTAATTGGGAGAGGTGGTTCTATTGAGAACTGCTCCTGGTTCTCTGACTTTTATACACCATAttggtgttttttattattatcgtAACATAATGAAGGAAAAACACTGCCTGCATTGTCACCCATTTTTATGGGTTttgtctttctgtttttatgaTGCCGTTTTAGGGCCAGTGTTGAAAATTAAAACGGGAGACTTTGagattaaagtcataatattttgggAATAAAGTCATAAAATTACAAGGTTAAAGTGGAATTGCTGCCATTAAAAGGCTAAATATTAAGGGCAATGGATTTACAGAAGGAAAGCAACTTCAGTGTGCTAAAATGAGGGATGCTGAGGAAcgttaaatacaatatattcttaaataaagTCTTTGACCTTAATAATGCAATCTCCCTAGTAGTACACCACATTATCcttaaaatattactattaactTTGTTCTCAAAATAGCACAACTTTATTCTTCAAGTATTACGACTTTTTTCTCTACAAataatgactttattctcaaagtctacacgtttttatttatttaacagtggCTCTACAATGTCATCATAGTTTTTAAACTAATTATCACCGGTTCCCAGTGTAATCATACATTTGATCATGAAGGCTGCACATGCTTCCTATATGGGGCATGCAAACTCCACCATGTCTTAAATGCATCTTGGTGccaccattaaaaaaaagtacattgacCTGTAATGTAAAGTACTGTGGAAAAGAAGAGGAGGGCTATCCTGCTGTCCGGTACTTGGGAATGCATTCGATCAGTTGCAGTACCCCCGGACCTCCTTCTGTGGACAGCACATGTTGCACTGCTCTGATTAAATCTGTTGAGTTCggttgagttgagtttttaCTGGTGTACCACTCCATCCACATTGCATCACATTGTTTTTGTTGCAATGTCATTTCATTTCAAGGTCTTTTATTGCTGGCTAAGACCTTATTTTTCGTATTTTTTGTAAAGTATTTTGATTTTaagttaatatttgtttttactggACAGAACATATGTATCTTTAGACTAGACCCCTGTTTTAAATGTGGATATACTATGTAAAAGTGGTAAACAGAACCTCAAGAACACCTAAATGTTCAAGGTGTTTGTAAATCCCAATTATTATGAATTTAATATTCCGGTGAAGttgaaaataaactatttttaaataca

Function

GO: NA

KEGG:

id description
K04916 KCNK5, K2P5.1; potassium channel subfamily K member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115409 lncRNA upstream 67838 34636506 ~ 34637200 (+) True G85709
TU115410 lncRNA upstream 128820 34575847 ~ 34576218 (+) True G85710
TU115400 lncRNA upstream 187595 34483579 ~ 34517443 (+) True G85700
TU115354 lncRNA upstream 385622 34272022 ~ 34319416 (+) True LOC111193252
TU115351 lncRNA upstream 419799 34272022 ~ 34285239 (+) False LOC111193252
TU115571 lncRNA downstream 460341 35195916 ~ 35196276 (+) True G85834
TU115572 lncRNA downstream 476032 35211607 ~ 35218417 (+) True G85835
TU115585 lncRNA downstream 595659 35331234 ~ 35331537 (+) True G85845
TU115582 lncRNA downstream 606782 35342357 ~ 35349126 (+) True G85842
TU115583 lncRNA downstream 615252 35350827 ~ 35353969 (+) True LOC111193253
XM_007248491.2 mRNA upstream 44258 34648064 ~ 34660780 (+) True LOC103040842
XM_007248490.3 mRNA upstream 61815 34637839 ~ 34643223 (+) True LOC103040539
XM_022672506.1 mRNA upstream 71092 34493825 ~ 34633946 (+) True kif6
XM_022673202.1 mRNA upstream 403904 34298723 ~ 34301134 (+) True LOC111193251
XM_022673197.1 mRNA upstream 440353 34243119 ~ 34264685 (+) True mocs1
XM_022673203.1 mRNA downstream 31487 34767062 ~ 34786115 (+) True LOC103028138
XM_007248452.3 mRNA downstream 51775 34787350 ~ 34792462 (+) True LOC103028446
XM_015605628.2 mRNA downstream 529358 35264933 ~ 35269468 (+) True LOC103041454
XM_022673206.1 mRNA downstream 552640 35288215 ~ 35339832 (+) False tfb1m
XM_022673207.1 mRNA downstream 552641 35288216 ~ 35339832 (+) False tfb1m
TU114974 other upstream 2263722 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2263722 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 2486276 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 11239 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 585937 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 901252 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2862602 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 3929592 38665167 ~ 38698313 (+) True G86497

Expression Profile