RNA id: XM_007248490.3


Basic Information

Item Value
RNA id XM_007248490.3
length 1987
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103040539
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34637839 ~ 34643223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtttaaaatgtatttttatgtatttacattataaacattgaTGTAAATGATGATGTATTTCTGTGCTTTTCTTTACATTAAGGTTCTGACAGTTAATAGGTTTGTTATGCTCAGCCCATAATTAAGGCAGTAACAATAaggaattttttttctttactctggAACAGTTTTGGTCTTCCCGGgaataacagcagcagcagcagcagcagagcgcTCATTAATCACTCAGCCACTAATGCTGTGCGCTCCAATGACCTGCAGCATCAGATCAAACATTAACCAATGTTCTGCTGACATGGTGGCTCTCCTGCGTTTTTATTAGTGATAAATGAGCTTGTGTGAGACGGTTCCTGCTCCGTATTATGGGATTCATGCTCAGGCGTTGTCAAAGGAaccagtgacacacacacacacatacacacacgtccACACGGATCCATCACACATCTGTTTCATCTCagtctgaccaatcagagcgaTGAAAAAGCTCAGAGCACTGTGGTCCTTCTCCTCCATCTATTTCTGGAGCTGGTCTATTGCGAGACTTCTGATTACTTGAAAGCATAAATCTGTATTAGAGCAAGTTTAGGTGTTTTAGAGgtttaaatttacctcagtagagctgATTATGACTTATaaagtagtttatttatttaatatctaatcatttttttgtgctaaacattaaaatggtcagtttttttttctataattagTAACTAGTAGCTGTAAGGAGTGTATCAGCATCAGTAGACGTCTTTCACTCCTTCAGTTCTTCATCAGTTTCAGCTCTGTCCAGCAGGGTCTCTCTCCGGAGCTGTCCAGCCCCCTGTGTGCTCTCTAAGCCCCCTCTCTCATGCTTGCGGGCACACATGGCTCAGCTCCGGGTTACGGGCGCAAAGTTCAGCTGGACCACCCTGCTCGCCCTCTCCCACTTCATCTACCTGCTGCTGGGGGCCACCGTGTTCCAGCACCTGGAGCGAGAGGCCGAGAGCAACAACCGCAACAACTTCCAGCTGGAGAAGCTCTACTTCCTCGCCAACTACAGCTGCCTGGACGGTCCGGCCCTGGAGAAGTTTGTGAAGGTGATTTTAGATGCCTGGGAAAATGGGGTGAATCCTTCAGGAAACTCCACTAATCCCAGTAACTGGGACTTCGGCAGTTCCTTCTTCTTCGCAGGGACAGTAGTCACCACCATAGGCTATGGGAATCTCTCCCCCGCCACCTTCCAGGGGCAGGTGTTCTGTGTGTTTTACGCTCTGTGTGGAATACCCCTCAACCTGGCCTTCCTCAACCAGCTCAGCAAGTGCCTGGCCTTCCACCTGGGACGCCTGGAGCACAACATGGTCTCCATGGTGCCTCGTAAGTCTATTCATCAGTGTATGGAGGTGTTGGCGGTGGTTGTGTTCCTGCTGATGGGCAGCGTGCTCTTCCTCATCTTCCCCCCGATCATCTTCAGCTATGTGGAGGGCTGGTCCTACGGAGAGGGATTCTACTACGCCTTCATCACACTCAGCACCATCGGGTTTGGAGACTTTGTGGTTGGTAACGGTCAGGACAGGCAGAATGTGTCGGTGTACCGCAGCCTGACGGCCGTGTGGATCATCTTCGCCCTGGCCTGGCTCGCTCTTCTCCTCAACATGGGCGCCAGGATCGTGGAGCATTTCCTGGGCCTGAGAAAGCCGCCCGTCTCCACGGACGAGGAGAGACCTTCATCCAGGAAGCAGGAGGAGAGTCTGAGTCAGAGAGCCATCCAGCAATGAACTCAAAAAACCCAGGGGGCTCGGGAAACCAGCGGCTTCATTATTGTACTGTTTTTGGCACAATATGcacagtgtacagtatattcatATTCTAGATGTTATACATCAACTTTGTAAGATGTTTAAAGTTGTGAATATTTGCTCTATCCTTGTAGATCAGATTGtttctgtatattattatttttattttttttgctccaAAAATATCACTATTacccctagt

Function

GO: NA

KEGG:

id description
K04924 KCNK16, K2P16.1; potassium channel subfamily K member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115409 lncRNA upstream 639 34636506 ~ 34637200 (+) True G85709
TU115410 lncRNA upstream 61621 34575847 ~ 34576218 (+) True G85710
TU115400 lncRNA upstream 120396 34483579 ~ 34517443 (+) True G85700
TU115354 lncRNA upstream 318423 34272022 ~ 34319416 (+) True LOC111193252
TU115351 lncRNA upstream 352600 34272022 ~ 34285239 (+) False LOC111193252
TU115571 lncRNA downstream 552693 35195916 ~ 35196276 (+) True G85834
TU115572 lncRNA downstream 568384 35211607 ~ 35218417 (+) True G85835
TU115585 lncRNA downstream 688011 35331234 ~ 35331537 (+) True G85845
TU115582 lncRNA downstream 699134 35342357 ~ 35349126 (+) True G85842
TU115583 lncRNA downstream 707604 35350827 ~ 35353969 (+) True LOC111193253
XM_022672506.1 mRNA upstream 3893 34493825 ~ 34633946 (+) True kif6
XM_022673202.1 mRNA upstream 336705 34298723 ~ 34301134 (+) True LOC111193251
XM_022673197.1 mRNA upstream 373154 34243119 ~ 34264685 (+) True mocs1
XM_022673198.1 mRNA upstream 374873 34243120 ~ 34262966 (+) False mocs1
XM_007248446.3 mRNA upstream 411059 34212417 ~ 34226780 (+) True fosl2
XM_007248491.2 mRNA downstream 4841 34648064 ~ 34660780 (+) True LOC103040842
XM_007248450.3 mRNA downstream 61815 34705038 ~ 34735575 (+) True kcnk5
XM_022673203.1 mRNA downstream 123839 34767062 ~ 34786115 (+) True LOC103028138
XM_007248452.3 mRNA downstream 144127 34787350 ~ 34792462 (+) True LOC103028446
XM_015605628.2 mRNA downstream 621710 35264933 ~ 35269468 (+) True LOC103041454
TU114974 other upstream 2196523 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 2196523 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 2419077 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 103591 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 678289 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 993604 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 2954954 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 4021944 38665167 ~ 38698313 (+) True G86497

Expression Profile