RNA id: XM_022672969.1


Basic Information

Item Value
RNA id XM_022672969.1
length 1894
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103031726
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23559052 ~ 23563050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCTATATACTGGAATAATTGGCCGTAGCTTGTTTAATAGCTGATATTTTTTACCGAGTATAAAATATCAGAATACAATGATGCTAATAGCTAATGAGGGAGCTGGCACGTCTTCTCACGTCACCCCTCTTCACTCCTCACACTTTGCTGCTAATTAATTAGTGAGTCTGCCAAACAGAAGGCCTGTTTCATGGAACTAAAGCCACTAGACCCTAGCTAGTTAGGTCTGACAACGTATTTCCTAGTACTTCTTGGTGTATTCCACAGTATTGTGACAGACTCTGTGGAATATGGACGATGAGGCTTCACTTGAGAGTTATTTTGACCAGTCAATTGCTGGTACATCTGAGTACATGTTTGAAGGGGACCTGGGATTGCAAGGCCCTCCACAGCTGCAGGATCCCTCCTTCCTGGCCTCCTCCATTTCTTCCCAGCAGAAAGATCTTTCAGAGGATCTGGACCTGAGCTTCCTGCCTGATGAGCTCAGTGCCCAGGAGGAGCCACCAGAGAATGTGGGTGTCAGTTCCAACGATGACAGTGGTATATACCAAGACTGTCCACCCTCACAGTTACCAGATGCAGACACAGACCCTAATAAGACCCAGCCTGTGGCCTCCCCCTTTTGCTCCCTCCCAATGACCCCCATGACACCTATGACCCCTGTTGCCCCAGTCACAGAAAGTTCAGGAATCATCCCACAGTTACAGAACATTGTGTCCACAGTAAACCTGGCTTGTCCTCTAGACTTAAAGTCCATTGCTCTTCAGGCTCGAAATGCTGAGTACAATCCCAAGCGTTTTGCTGCTGTTATAATGCGCATCCGTGAGCCCAGAACAACTGCCCTCATCTTCAGCTCTGGAAAGATGGTCTGCACTGGTGCAAAAAGTGAAGAGCAGTCTCGTCTTGCTGCCAGGAAATATGCCAGAGTGGTGCAGAAACTCGGCTTTCCAGCCAAGTTTCTTGACTTCAAGATCCAGAACATGGTGGGCAGTTGTGACGTGTGTTTCCCCATACGGCTGGAGGGCCTAGTTCTGACTCACCAGCAGTTCAGCAGGTGCAAAAGATCGCTCTGAAATCTATGAAGCTTTTGAGAATATCTACCCAATTCTAAAAGGATTCAGGAAACAGTGAAAAGGAAAGTGTCAAGCAAGGAAAATGTCAAATGTATTGCTTGCCTTGAAAGTAATACTTTGAAACAAGAGAATTTCAAtcaaacattgtgttgaaaattaacattttgttgCTTGTATATGTTTATCAGTGTTGTCAGTTGAGTGCAAATGTTTTTGTTAACATGTATTAGAAAAACTATGAGAAATAACTATAAAGTTGATATTCTGCTATTGAGCTCTGcacattattttatacataaataaaacaaaataaaaaaaaatacatgggaATCCTTTAATAAAGAGCTTAATCCACtggtgtttctgtttgtttgcgTTTTTTGAAACAtagtttaaatctgtttttaaaaaagattcTTAAAATCCATTCaaaccaacaaaacaaacaccagattgaaagtgtgtgtatagtgtagtaatacAGGGCATTCCCAGCTCTGGCGTCCAGCACATGGGATTCAGCATTTTCCATGAGGGTTATAACCTAGGGAAGTCAGAATGGGtgtacacactcattctgacataCTATTGCATCTAAAAAtaacatcactgattgtggaaatgtcacactagacctcaagcagcttggactgtgctTGGAAACTCTGgttccttgatttccaaatgaaatgcaaaatttacggATGGTCAATTATGGTTTGGAGAGCAGtgtaatctgctggtgttggtccactgtcttacatcaagtccaaagtcagtgcagtgttttcctggaaaatcttacagcaaaagacactga

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111515 lncRNA upstream 6133 23499036 ~ 23552919 (+) True G82753
TU111516 lncRNA upstream 60039 23498719 ~ 23499013 (+) True G82754
TU111497 lncRNA upstream 85597 23473204 ~ 23473455 (+) True G82748
TU111319 lncRNA upstream 332142 23225765 ~ 23226910 (+) True G82606
TU111308 lncRNA upstream 350253 23208495 ~ 23208799 (+) True G82596
TU111526 lncRNA downstream 18098 23581148 ~ 23581751 (+) True G82763
TU111529 lncRNA downstream 27450 23590500 ~ 23590893 (+) True G82766
TU111531 lncRNA downstream 33162 23596212 ~ 23596474 (+) True G82768
TU111552 lncRNA downstream 206475 23769525 ~ 23772117 (+) True G82785
TU111587 lncRNA downstream 341810 23904860 ~ 23905395 (+) True G82813
XM_022672964.1 mRNA upstream 9517 23505656 ~ 23549535 (+) True LOC103030470
XM_022672965.1 mRNA upstream 9517 23506778 ~ 23549535 (+) False LOC103030470
XM_007251901.3 mRNA upstream 9710 23506778 ~ 23549342 (+) False LOC103030470
XM_007251893.3 mRNA upstream 60495 23475259 ~ 23498557 (+) True LOC103028567
XM_007251896.3 mRNA upstream 85966 23454001 ~ 23473086 (+) True tyro3
XM_007251903.3 mRNA downstream 1076 23564126 ~ 23570689 (+) True atg14
XM_007251917.3 mRNA downstream 312484 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA downstream 312672 23875722 ~ 23877770 (+) False timm9
XM_007251931.3 mRNA downstream 376860 23939910 ~ 24009312 (+) False LOC103037620
XM_007251933.3 mRNA downstream 376861 23939911 ~ 24009312 (+) False LOC103037620
TU111323 other upstream 327734 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1200917 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3885414 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3893005 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4628298 18930238 ~ 18930754 (+) True G81704
TU111569 other downstream 312389 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 312389 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 346632 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 576339 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 743561 24306611 ~ 24306693 (+) True trnal-uaa_1

Expression Profile