RNA id: XM_007251925.3


Basic Information

Item Value
RNA id XM_007251925.3
length 1360
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103037301
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24012553 ~ 24019511 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCCCACCCACTTCCGCTGTGCAGGTGAGCCGCTCAAACAGGAAACGGCAGGAgcggattttattttctctcctttATCTGAAGAACGTGGGGATGTGTGGGTTTGACAGACAGAAGGGGCCTGGAAGGCTCATGGCTAAAGGACTGACCCTGATTGTTATTGGTCACATCAATTTCATCCTGGGCGCTATCGTCCACGGTAGCATTTTACGTCACATCTCTAAACCAAGCGGCAAGATTTCCACAGAATACACAGTGTCCAACATCATAGCCGTCACCTCCGGCCTGCTGagcATCGCAAGTGGAATTGTTGCAATATTGGTGTCTAGGAATATTACCAACTGGAAACTACACGTAGGTTTGTTGGTGAGTTCCTTCTTGAACACACTGCTTTCTACAGCCTGTTGCGTGGGATTGCTGCTGGCCATCAGCCTCACTATTAAAGCAGACGGCAGTGCACTTATGCAGGGCTGCAACTCCACAGGCATGCCAATTAACGCCCGCTCTCCCATCAACGCCAACTGCCCATTTGACACCACACGCATTTATGACACGACTCTGAGTCTATGGTTCCCCTGCACATTGCTTTCAGCTATGGAGACAGGCCTGTCTGTGTGGTGTTTTATAATAGGTCTTACACTGAGAGGAATTGGGCCATGCGGTCACACCTACCTCAAAGAGCAGCTGGAAGAGGAGGCATTGGCATCCACATCAAAGAGAGACCCAGATTTTGTAGCTCCAAGCCAACGTCTTATTGGACACCATTCTTCTCATgcataaagaagaaaaacagtCAGAAGTCAAGATGATTTGCTGACGCTCTACAGCTCTGAGGTAAAAATGCTGACTGTAGTCAGTTGAAGTCCAGGTTGCATTTCCATGAGCATGTATTAGGCTAGTCCAAGACTGAATTGCATTTCTAATGGTGATCCATCACTGACAGCCCTTTGGTGTTTGGCTTAATATGGATCCAGGAAACTCCTTTTATGTATTTAAGCTGAGACCcagacaacaacaaaaaaactgaactaGAAACAGTTCTCGATAAGAGCAACATTCCTAAATGACTGTTAAGAGTTTTTCAATTGGATAGCGATTAATTATGCTgatatttttatcatttgagttttatactgtattttttttttctgcaatgcTTTGTACTACACTGtgttatatttgtgtatatctgtgtgctgaaaacacaaacaatggCTGTGACTGAAGTGGATCTCTACTCCTTACtcccaatgaaaaacaagtatctttatttttgttgatttttagtcaACAAAATTCCCTTACACTATGTaacaatttcttgatgaatggactaaTAGAAATTATTCAGaattacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111583 lncRNA upstream 38578 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 89693 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 97094 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 103945 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 107158 23904860 ~ 23905395 (+) True G82813
TU111624 lncRNA downstream 117065 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 295204 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 329930 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 330018 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 337464 24356975 ~ 24367973 (+) True LOC111193226
XM_007251931.3 mRNA upstream 3241 23939910 ~ 24009312 (+) False LOC103037620
XM_007251933.3 mRNA upstream 3241 23939911 ~ 24009312 (+) False LOC103037620
XM_007251937.3 mRNA upstream 3241 23939911 ~ 24009312 (+) False LOC103037620
XM_007251932.3 mRNA upstream 3241 23939911 ~ 24009312 (+) False LOC103037620
XM_022672975.1 mRNA upstream 3241 23939911 ~ 24009312 (+) False LOC103037620
XM_007251941.3 mRNA downstream 4031 24023542 ~ 24046622 (+) False fzd3
XM_007251940.3 mRNA downstream 4034 24023545 ~ 24046622 (+) False fzd3
XM_022672978.1 mRNA downstream 4397 24023908 ~ 24046622 (+) True fzd3
XM_022672493.1 mRNA downstream 85701 24105212 ~ 24110198 (+) False LOC103044752
XM_007252050.2 mRNA downstream 88398 24107909 ~ 24110198 (+) True LOC103044752
TU111581 other upstream 91855 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 134786 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 134786 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 781235 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1654418 22357644 ~ 22358135 (+) True G82488
TU111651 other downstream 119878 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 287100 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 287840 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 289297 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 290902 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile