RNA id: XM_007251926.3


Basic Information

Item Value
RNA id XM_007251926.3
length 5259
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC103037620
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23939910 ~ 24009312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAGTATatgtgcatcttttttttgttttaacatcTTGTTTTAACATCCCTCTCACTACTTTGACGTAACTAGGTGGCTAAAGAGCTAAAACAGAACTCTATCCtctctgcagattttttttttcctagagTGGCGTAGCTTTGTTGCTGATGTTGATCTCCAGTAAGCAGTTGCCGATTGGCCGCTCCCAGAGCTGGGACACACTTGGTGGGAATGAGGGTCAGTGGGACCGCAGCGAGAGCATTTATGAGCAGCAGGCCAGGATGGCTGGTCGACGGAATTCCTTGTCCTATGGAGGTGATGCAGGAGGAGTTTGGTATGAAGCAGCCCCTGGGGTGCGTCCACCTGACCTGGATATGAAACGGGAGCCGTACTCTTACCAGGAATCACTTTATAATCAAACCTACTTGGATCGGCCAGATCCTCGCAACATAAGAAAGAGTTCTGTACCTGAGCTGAACAGTCACTATGAACGACCACCTGTGGCCCACCGTGGTTCTTTGCCCCCACCGGATTTTTACCAGCAAGATCCTGGCATAGTTCCTAGGCCACCAGATGCATTTTATCGTGGAGAACAGCCTCATCTGCTCAATAGATCAGCTTCTCATTATGGACTGATGGGAGGAACTCGGCCACCGTGGGAACAGAACCAAGGTGGGAGGTCTGGTCCTCCTGTCCCTACTCCTGTCCAACCTCCTCCACCCTCTACTACTCACGAAATTGCCCGCATGTACAGGGAACCATCTCTCCCTGGACCTCCACCTGCTACCCCTGTATCAAAGATGATGGCAGATGGGCAGCGCATTCCAAGTCGGGCACCTTCTCCTGCGCGCTATGGCATGGAGCCAACATCTCCCCGCTATGCTGTTGAGCCACCAGCTTCTCTTCCAGGGCACTCGGTGTATACTGATATTAATGGGAGACCCCTGGATCAGTCTGCAGCCACCTGCCTAGTGGTCGATCCAGCTGCTCAGGGGATGGACGGGACTGCCAGAGGTATGGTCATTCGTCAGGAAAGCCCTTCACCATACACTATACAACAGCAAGCACCACAACAAACTCAACAGCAGTTGCAGCAGCAAATGCAGCAGGTTCAGCCACTCAACCAATTGCAACAGGCTCAGGCAGTACAGCAGGTGCAGCCAGTTCAACAAGTACAGCAAATGCAGCCAGTTCAGCAAATGCAACAAATGCAGCCAGTTCAGCAAATGCAACAAATGCAGCCAGTTCAGCCAATGCAACAAATGCAGCCAGTTCAGCAAGTGCAACAAATGCCACCTGGTCAACAAATGCAGCAAATGCCTCCTGTGCAACAAGTGCAGCAAGCACTGCCTGCACCAGTTCAACAAGTGCAACCTGTGGCAATTCAAAATCCTGTCTACAATCCTAACCCTGTCCAACCAGCTCCCGTCCCAGCGTCTACCCCAGGCATGGCTGCTGTCCCTACGCAGTTACCTCCTCAGTTCCCTTCTCAACCTGCTATTCCTGCTCCTCCTTCTTCAGTCCCTCAAACCCCATCAGTTCCTCTGGACCCTAAGAGGACAGCAGACCCAGAATTTTTGGCTTTTCTACGCAACGAAGGTCTATCTGAGAGCACAATCACCTCTCTGCTCCAACAAGGCTTCGATTCCACTGCAATGTTGGCTGTTATGGAAGAGAATGACGTTCGCTCTGTTGCACCCAATTTAGGACAGGCACGTGTTCTTTCTCGCGTGGCACTCGGCTGCAAACGTCCACCGGACGTACCTCCTGCCACCCCCCAGCACCCTAGCGCTCCAGTCCGTGGCCGGTCTAACAGCTTCAGTCATCGCAGTGACATATACATGCACCAGCAAGCGCCAATGACTCCCGGCATTGACTCTCAGTATATGCAGCCTCCCGCCAACCTTGTGCCGAGCATGTCACCCAGGATGGGCGAAGTAATGGGGCGCAGGCCGAGCAGTGCTCCCTCCCAGCAGCTTCTGGAGACAAGCAGCTACCCTGGAATCAGGACACCAGGGGCATTTAGCGGTGCCATGGTCCCTGTGCAACCACGTCCAATGTCTGCCTACACTCCTCAAGCTGGTTTGCACATGCCCTCGATGACTGCAATGTCCCAGCAAGTATCTCTTCCATCACACATGCCAGGAATCTCACCACACATTTCTGGCTTGCCACAGCATATGCAAACTTTGCCGACATCAATTCACGGCATGCCACAGCAGATGCCAGCTCTAGCTGCAGTGCCACAGGCAATGGCTGTGCCTGCTCTGCCTCCCCAGCAAGCCCCTAAGGCCTACTCCACCAACTACACAGTGCCCATGGAGCTGATGAAGAGGGATCGAAGCTTAGCCACCATGACACCCATGGCCAGTCCACACCCAAGCCCACATTTAATGCGAAAGGCTGGATCGGCACCTCATGAGAGCGCCCTGGTTCCTGTAGGTGCTATAGCAGGTCAGAGTCCTAGCCTTGCCAATCAGAAGCTCAGCCGGCGCACTGGACCTCCAGTTATCGTCTCCACTATGGCGTCACCTGACACAAgTATAAGGCCCCAGATCATGAACGGGCCGATGCATCCCCGACCGCTAGTGGCTTTGCTGGATGGAAGAGACTGTACTGTGGAGATGCCAATCCTCAAAGATCTGGCAACCGTGGCCTTCTGTGACGCCCAGTCTACACAGGAGATCCACGAGAAGGTACTTAATGAAGCAGTAGGAGCAATGATGTatcacaccatcacactgaCCAGAGAGGATCTGGAGAAGTTCAAAGCTCTACGCATTATCATCCGCATCGGAAGCGGCTACGACAACATCGACATAAAGGCCGCCGGAGAAATGGGCATCGCTGTGTGCAATATCCCATCAGCAGCTGTGGAAGAGACGGCAGACTCCACCCTGTGCCACGTCCTCAACCTGTACCGCAGGAACACATGGCTGTACCAGGCTCTCCGGGAGGGCTCGCGGGTCCAGAGTGTGGAACAGATCAGAGAGCTGGCATCAGGGGCAGCACGCATACGAGGAGAGACACTTGGACTCATCGGATTTGGCCGATCGGGTCAGGCAGTTGCGGTGCGAGCGAAAGCATTTGGTTTCAACGTGATCTTCTATGACCCGTATCTGCAGGATGGTTTAGAACGGTCACTGGGGGTCCAGAGGGTGTACACTCTTCAGGACCTGCTGTACCAGAGtgactgtgtgtctctgcacTGCAACCTGAACGAACACAACCACCACCTCATCAATGACTTCACCATCAAACAGATGCGCCAGGGAGCATTTCTGGTGAACTGTGCACGAGGTGGACTGGTGGATGAGAAAGCTCTGGCTCAGGCTCTAAAAGAAGGCAGAATCCGAGGAGCTGCACTGGATGTTCACGAATCCGAACCATTCAGTTTCACCCAGGGTCCACTGAAAGATGCTCCTAATCTGATCTGCACCCCCCACACAGCGTGGTACAGTGAACAGGCCTCGTTGGAGATGCGGGAAGCAGCCGCCACCGAGATAAGAAGAGCCATTACAGGTCGTATTCCAgacagcctcagaaactgtgTCAACAAAGAGTTCTTTGTCCCTTCTGCACCGTGGGGAGtagtggagcagcagcaggtgcACGCAGAGCTCAATGGTGGTGCATACAGAGTGGCCCAGCCGCTACCAGCCATATCTCCTGGCGGCATGCAAGACAAAATGTATACCTAAACTCAGTCAGGCTTGTTCAGGGTCAGGTGGGCGTGAACCCTGGAGGTGTAGGAGGTCCAGCAGCAGGCACGAAGTCAACTGGGACGTCCAGTGCCCATCCCAACTCCCTGCTGCCAGTCTCTCAACCCAGCCGTGCCCCCTCCCCCAGCAAGCCCAACAAACACAGCACAGAGAACTCCACACAGAGCCAGAACCACAGTAGCCACAGAGACTTCCAAAAGAAACTGCTGCTGACCAGCAACACTGACCAGCGCAGCGGAGTGTCTGCTCCAAAGCAGGGACCAAAAAGAGAAGGACTGGCTAGCAGCTGATGCTGACTGCAGTGGGGACGGCTTGGTCATGGTCATGCTCGGAGGtgtttctctcctcctctctgttGAAgggattttagtttttttttttttttttccctgttctATTTtttgttccagatgttttcttCCACAAGCGTGTTTGCTCTTCATGTCTTCTTGGGACTTATGTTTAATGAATACCTGTGCAGATGGGTGaggtttctttgttttgttttgtttttgtctggGGGTGTGGCTTAGCACAAACTCTGCCCACTTTCATCTTTGCTGCTCTGGCTGACAGCTCAGAGCACCTGAAGGACCTTGAAGATCACCTGCCATATCTGACTCTAGATCTAGATGCATTCAGTCAGTCACCCTGTGTTCTTGTATCCCTTTATTATCGTCTGTCCCTTTTTCAAACCAAATTAGTACTTGtttgaaattattaaataacatttatacgTTGTATTTATCAActgaaaacagacagaaaaagttGTCTGTAGGAACTCTGATGACCTTTGACAAGACCCTTAGCTCTCTCCTGACTTGGCCTTTTAACCACCTGACCTTAGTTAAATGTATACGCGCACAAGTCCAGTAACCACCAGCTCTGATGTTATGGAACTGATCTGAAACTGCCTCAGATGTATTAATTTCCACATATGTATTGTTTTGTAAACAGCTTGTGCATGTTAGGAATTTTCCTTCGCatattaaattcagtgtttgaaTTTAAATTCATCAAATCTCTTTTGTGTTTGAGTACTTTAAGACTATAGATGGCAGCTTTTAAAGAAAGGGTCCAGAGCCAAGAGCCACCCCTCTCAGgaaacatttatacattttttgtctTCAGAGTCTATGAACCAAGAACCAAGGATCATTTGTCTTGTTACATTCTCCCACACAGTTTTCCCAGGACtttctgtttagttatttttttatagatctGACATATAATCTTTAATTTGTTTTGATGTTGAATGTATGGCAGATAGATTTGTATTGCCTAGTTTAATATTACTATGAACTTAGTCTTCTGTGACCCCTTCTCTGGTCTTCTGTTTGGGTTCTGTGAGTGGGAAGacacatgttttttgtttgattgttttgttGCTGAGATGAGAAGTGTATTCCAGGACACGTATTGCAGGACAGTGGGCTTGGTTTTTATTGTGAGTGTTTGTATTCGTTTCTTGTATTGAGGCAAATATCTAGCTTCCAGTTCAAATAAAGACGAAATACCATTGGGACaccctatactatactgtacta

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0060386 synapse assembly involved in innervation biological_process
GO:0070073 clustering of voltage-gated calcium channels biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0045634 regulation of melanocyte differentiation biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K04496 CTBP; C-terminal binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111585 lncRNA upstream 47865 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 55266 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 62117 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 65330 23904860 ~ 23905395 (+) True G82813
TU111552 lncRNA upstream 198608 23769525 ~ 23772117 (+) True G82785
TU111624 lncRNA downstream 127264 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 305403 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 340129 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 340217 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 347663 24356975 ~ 24367973 (+) True LOC111193226
XM_007251917.3 mRNA upstream 92955 23875534 ~ 23877770 (+) False timm9
XM_022672974.1 mRNA upstream 92955 23875722 ~ 23877770 (+) False timm9
XM_007251903.3 mRNA upstream 400036 23564126 ~ 23570689 (+) True atg14
XM_022672969.1 mRNA upstream 407675 23559052 ~ 23563050 (+) False LOC103031726
XM_007251925.3 mRNA downstream 3241 24012553 ~ 24019511 (+) True LOC103037301
XM_015606545.2 mRNA downstream 3241 24012553 ~ 24019511 (+) False LOC103037301
XM_022672979.1 mRNA downstream 3281 24012593 ~ 24019511 (+) False LOC103037301
XM_007251941.3 mRNA downstream 14230 24023542 ~ 24046622 (+) False fzd3
XM_007251940.3 mRNA downstream 14233 24023545 ~ 24046622 (+) False fzd3
TU111581 other upstream 50027 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 92958 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 92958 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 739407 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1612590 22357644 ~ 22358135 (+) True G82488
TU111651 other downstream 130077 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 297299 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 298039 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 299496 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 301101 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile