RNA id: XM_007251948.3


Basic Information

Item Value
RNA id XM_007251948.3
length 3912
RNA type mRNA
GC content 0.45
exon number 26
gene id ahi1
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24113136 ~ 24125115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACAAGGGGCGGGGCTAAAACTTGTTTATTGTTGGCTGCCATCGCAACGAGTCAGCGGCTAACGGACTGTAAACGTTTTCATAGGATATGGTTTGATTTTCAGTTTCAGGGATCTTTTGTGCACAGAATGACTTTGCTCCCAGTGCTTGAGGATGCCGGCAGGTCAGAGTGATGTGAGAGCAAAGACTAGAGCCCGTTTTGACGAGGTGTTAAAGAGATACACAAACCCTCCCTCAGAGAAAAAGAAGTCCAAACAGCGAGGAGTCGAGCTGCAGGAGAATGTTGTGCTTCAGACATTGAGCAAAAACTTGGATTTAAGTAAAACCACAGAAGAAGATGAGACCATTCTCAATAACACGTATGACCCTACACAGGGTAGCCCAAGGTACACTAAGAACAGACGCAGGGAGGTCGAGGTGTCAGAGAAGATCAATGTCAGCAATAATGTAAATGGAGAGAAGTCCCCACTGGCCTCAGGAAAGAAGAAGACTAAAAGAAAGCTGCCCCCACACCCACTTGTTCAGGATGAAGTAGACACAGACAGAAATGCTGCAAACTCTGAAACAAAAGTCACTGTTGAACCAGACTGGGGGCAGAACAGAAAGGGTAAAAGAGGGAAGAGCAGAGGCGGAAACAGAGATAGTGGTCACAACGCAGGCTCTGAACCTGAAGATGATCTTCTCAAAGAATATCAGCAACAGATTAGTCAAGATGAGGAGAGGCCTATAAAGAAAACAACTCATAACAGACAAGATGAAAAGTTGCCCAGGAGCCAGGAAACCTCAGTATTAAACAATGAGCtcggaaagaagaagaaaaagaagaagaacctGAGGGGTAGTGATGAGGATGAAAGCCATTCTGAATTTGAGAAAATAAAGGAGCCTATTCAAGGTGATGCTGTAGAAGAAGACACCGTAGATACAGCAAAACCcaaaggaaaaaagaagaagaaaagaaaagatgTGGTAGTTGAGGACAGTCAGACAGAGGTGGAGGATTCTCCGAGGCAGGTCTTTGATGAAAACCTAGTGCTAGGAGTTTACATTCATCGTACAGACCGACTCAAGACTGACCTTCTGGTGTCCCACCCCATGGTCAAAGTGCATGTTGTGGATGAGATCACTGGACAGTACATCAAGAAAGAGGACAGCCATCGTCGAGTGTCTTCCTTTTATGAGCAGGAGAACATTGATCACATCCTTCCAATCATAACTCAGCCTTTtgactttaagaaaaacaagtCAACAGTCCCAGAGTGGGAGGAGCAGATCATCTTTAATGAGCGATTTGGTTATTTTCTTCAAGATAGTGAAGAATGTCCACAGGTCATCCTCTTTTTTGAGGTTCTTGACTTCATCAGCATGGAGGAAGCAAGATCAAATGTCTCTGCTGATCAGCATGAGCGTGGATTTCGAAAAATTGCTTGGGCTTTTTTAAAGCTTGTAGGAACCAACGGTGTGCTGAACATAGATAGTAAGCTGCGTCTCCAGCTGTACAGCCCTCCTACAAGAGCAAAGAAAGTTCCACAGACAGTTGAAGTGTTTCAGTGGTGGTCAAAATTCCCTAGGAATAGATATGCCTCAACTCTTTATGTGACAGTGAAAGGCCTCAAACTACCAGAACATGTTGACCCCGGTATTCGCTCAATGATGGCTCTGCAGCAGGAGAGGGGCAGCACATCATACAGTGAGCTGCACACAGATCTTGCTCAGAAAACCTCCACACAGCTGTTAGAGGGCAAAGCAGAGGTCATAACGTGGAGTCGCTTGCCTGGACAGGTGTGTCGTATTCCCAACAAGCTAATGCTGTCATTCCGTGGAGGTCAGATGGGCTGCTTTATTCTACGCTTCTCTCATGATGGCAGGGCTCTGGCTGCTGCTTGTGCAGACAGGGATGCTTTTCCCATTGTAGTATACGAGATCCCTTCAGGTAAAGCCTTGGCGTCTTTTAATGGCCACCTGAGTATTGTCTATGATCTCTGCTGGACCAGAGATGACAGGTGCCTCCTCTCAGCATCCTCTGATGGAACGGTCAGAGTGTGGAACATTGAAAGACTCCAGGCCCTTGCACAGAAGGTCCTCCCTCATCCATCATTTGTATATTGTGCTCAGTATCACCCACTAAACCAGAACCTGCTGGTTACTGGCGGTTATGACTGTCTGCTCCGGGTCTGGAATCTAGACGTCAAAGACGTGAACGGACAACTGCTGCAAGAGTTTGAGGGACACAAGACTTTCATCAATGCTCTCTGTTTTGACAATGAAGgaacgAGAATGTATTCTGGAGACAATGCTGGCGTAATTGTTGTGTGGAATACTAAAACTGAGGATAGATCTCGGCATGGTCCAACACATCTGTGGAAAATTGAGAAGGAGATAAAGGAAAGTGATTTGAATGGAATTCCCATCAACTCCTTAGAAGTGCACCCAAATGGCAGGCGTCTTCTAATCCATGCCAAAGACAGCGTTTTGAGAGTGATGGACTTGAGAATTCTTGCTGTAAAGAAATACATAGGTGCCACAAATTACAGAGACAGGATCAACAGCGCCTTCACTCCATGTGGAAGCTTTATTTTCTCAGGCAGCGAGGATGGACTTGCCTACGTGTGGAATGCCGAAACAGGTGATCAGGTGGCTGTGTACTCAGAGTTGTGTTATCCAGTCTCTCTCCGTGGAGTGGTTTTCCATCCTCATGAACACATGGTGGCTTTCTGTGCCTTTGGGCAAAGTCAACCaatccatatatatatgtatgaccGTAAAGTTGCCCAAATGGACCTGGAGAGCTTGCGGGGGCTAAGCAAGTCTGAGACTGCTGACAATAAAACAGCCAGGAATCAGTCTGATCTACTGCCGTTCCAGGATACCTCAGCCTCTGGGGTGGACCGATTTGCCAGTGCTGCTCGCATGTCACTGAAAATGCAGCGTGTCAAACAGAAACTGGATTCAGTTATAGAGCCACATCGCAACCCATCTGTCATGGACTATTATTATGAACAGGgaAGCATCTCTCAGATGGGGAAGAGCTTCACACCAGAGAGCATGAATATGTCTCTCCCTCCTCCATCTTTGCTGTCCCCACACTCCAAGATGCTGCAGCACTCCAGCTCGTTTAATACCCAATTTATACCTCAGGCCACTCTCAGCTCACAAACCTTGGGGCTAAGTGCTCTGGGCCAACCCATTAAAAGAGCTCCATTCCTAAGGCAAAGGAGCATACCAGATTATGAATTTTCTCATGTAGTTGAGAATGACATGGCACAAGTGCAGCAGACGGTTGTGTCTTTGTATGACTACAGCGCTAATCGATCTGATGAGCTAACAGTACGGCGCGGGGATGTTATCCATGTGCTGTATAAAGACAATGAGAGCTGGTGGTTTGGGTGCCTAGCCAATGGACAGAAAGGCTACTTCCCTGCAGCCTATGTAGCTGATGAAAATGTCCGCAGCCATCAGTGCCTCTGGAGAGCTGAAGATAATTTCTGAGCAAGACACTGACGTGGAGGCATCTGTTACCAAgaccaagaagaagaaaaaggtaaagaaaagtGAGATCACTTACGATCTATCTCATAATCAATCATCTGATCCTGAAGCTCCTGCACCTGCATCTACACGAAAAAAGAGACCTCTTCCAAGGTTAGGACCCACCAACAGTGCTTTCAAACCATCTGCTGCAAATCAGGAGCAGCAGCCATATTAATAAATAAGGGAAACATATGCATACTGATGTTAAGAAtgtgcttatttatttttgtagtcaAGCCTTATATCTGaatgtattttgtaattttataatgaatatttttagttttactaAAACAAAATCACTGTTGTgatatgtgtgtttgtacaaGTATTTGATATCACATCTGCAAGATTTAAATAAACACCCAAATATAGTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111583 lncRNA upstream 139161 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 190276 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 197677 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 204528 23908338 ~ 23908608 (+) True G82814
TU111587 lncRNA upstream 207741 23904860 ~ 23905395 (+) True G82813
TU111624 lncRNA downstream 11461 24136576 ~ 24138904 (+) True G82838
TU111920 lncRNA downstream 189600 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 224326 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 224414 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 231860 24356975 ~ 24367973 (+) True LOC111193226
XM_022672493.1 mRNA upstream 2938 24105212 ~ 24110198 (+) False LOC103044752
XM_007252050.2 mRNA upstream 2938 24107909 ~ 24110198 (+) True LOC103044752
XM_007251941.3 mRNA upstream 66514 24023542 ~ 24046622 (+) False fzd3
XM_022672982.1 mRNA downstream 42004 24167119 ~ 24257250 (+) True syne1
XM_022672985.1 mRNA downstream 139330 24264445 ~ 24269866 (+) False rmnd1
XM_007251957.3 mRNA downstream 140619 24265734 ~ 24269866 (+) True rmnd1
XM_007251958.3 mRNA downstream 146227 24271342 ~ 24275108 (+) True LOC103045657
XM_007251961.3 mRNA downstream 174056 24299171 ~ 24302766 (+) True stx11
TU111581 other upstream 192438 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 235369 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 235369 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 881818 23230430 ~ 23231318 (+) True G82609
TU111179 other upstream 1755001 22357644 ~ 22358135 (+) True G82488
TU111651 other downstream 14274 24139389 ~ 24142232 (+) True G82853
trnal-uaa_1 other downstream 181496 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 182236 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 183693 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 185298 24310413 ~ 24310495 (+) True trnal-uaa_4

Expression Profile