RNA id: XM_007251958.3


Basic Information

Item Value
RNA id XM_007251958.3
length 1752
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103045657
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24271342 ~ 24275108 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctttggacatttttgttggacctggcaaccctgcgcGGGAGAGTCTCAGCCGTCCACAGGAGCTGCGGTAGTATGAAGACCACCGCGTTTAGTTTAATAAAGGATTCTGAAAGAGAAAGTTGCATAGGTTGAACAATGGAGTTGGCCCACCATGGTCTTGTTCTTCTGCAGCGGCTGAATGCTCAGAGGGAGTATGGTTTCCTATGTGACTGCACAGTGGCTATCGGGGATGTTTATTTCAAAGCACACAAGGCGGTCCTTGCAGCGTTTTCAGACTATTTTCGCATGCTGTTTGTTCACCAGGACAGTGATTGTGTTCGACTGAAGCCTTCGGATATACAACCAGAAATCTTCAGCTATCTGCTTAACCTGATGTACACAGGACAGCTGACCACACAAATGATTGATCCTCAGCACCTGGAGCAGGGAGTGAAATTCCTGCATGCATACCCTCTTTTACAAGAAGCAAGTCTTCTTATTCACCCAGAGTCACAATGTGTTCCTTTGGCAAACTCTTTGTATGGGATTCAGATTTCTGATCAACCATGCGGCTTGCCCAGTAAAACCACAGCTTGCAAAGGTCACGCCTGCCCTGAAAACAGTAATGAAATCTTGTCCCAGAACCTTTCAGAGGTTGCAGAAACAAAAGCCAACACTGTGGATGTCTACAATCAGGAGTCTCCCAGTGAGGTCGCTGCGTCCAGCGCCATCACCATCCAACATATTACATCTGGTATAATGAGAAGAAATGCCTCCTCTAGGAAACGTTACATTTGCAATCACTGCGGGAGTCGCTTCAACCAGAGATATCATTTAAAGGAGCATCTCCTTCTCCATGCCAACCAGACCTTTGAACATCATATGCCATCTGTGGTAGATAGCTGTGCTATGAAACTGGAAGGTCAAGATGGGGAGGATGAGGTCCTGCGTGTTGACAGTGATGATATCAGTGACAATGAGCTACAGATGAGGAGGGACAATACTCCGCCTCCATCAGATATAGCTGATATAGACAACCTGGAAGCCCTGGAGCGTGAGGTAAAGCGACGGAAGTTTGAGTGTCCAACTTGTGGCCGCAAGTTCATCCAGAAGAGCCATTGGCGGGAACACATGTACATCCACACAGGCAAGCCATACAAATGTAGTGGCTGTGGGAAGAATTTTTGCAGAGCTAGCCAAGCGTCCAGACATGTGTGCCTGATTCAGGGTGAAGAGTCATACACAATGGTGAATAAGCAGAGCATGGTTCTGTGTGGTGGAGAAGACAACAGTCAAGTTGAGGCACTTTTTATGTCGTCAAGCAGACAATATAAATGCAGCATATGTGCATTGCCTTTTTGCAGCCCTTCTGAGGTCCTCAAACATCAGTGTCAAACTCAGGTGATGGTCACACCCGTGCAAGACGACCCGTCAGGTGAACATACAAGTGGCAGTTCAGTAACTGATGAACCAGTCCCGAATACAGTGAGCATGTCCACCGAGGAAGTGTAGCAGAAATTAAGCTCTTTTGAGCAATAGATAATGTTGAActgtttgtttagatttttatttttctaaatctattttttcatattttagggccaagaaaatgcaaagaagggcacagctttttaaaactatGCCAATGTGTACGCCagatgttttgtcatatttgaGATCAGAGAATCAGTTGTTCCTGTTGGTTTATACGGATACTGCTcccaaataatttatttatttaagtgataTGTAGAAGAaactaaacatgttt

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111624 lncRNA upstream 132438 24136576 ~ 24138904 (+) True G82838
TU111583 lncRNA upstream 297367 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 348482 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 355883 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 362734 23908338 ~ 23908608 (+) True G82814
TU111920 lncRNA downstream 39607 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 74333 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 74421 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 81867 24356975 ~ 24367973 (+) True LOC111193226
XR_002650358.1 lncRNA downstream 297220 24572328 ~ 24576551 (+) True LOC111193227
XM_022672985.1 mRNA upstream 1476 24264445 ~ 24269866 (+) False rmnd1
XM_007251957.3 mRNA upstream 1476 24265734 ~ 24269866 (+) True rmnd1
XM_022672982.1 mRNA upstream 14092 24167119 ~ 24257250 (+) True syne1
XM_022672980.1 mRNA upstream 146227 24113136 ~ 24125115 (+) True ahi1
XM_007251961.3 mRNA downstream 24063 24299171 ~ 24302766 (+) True stx11
XM_015606503.2 mRNA downstream 42202 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA downstream 42202 24317310 ~ 24336229 (+) False LOC103045057
XM_007251966.3 mRNA downstream 108770 24383878 ~ 24403591 (+) True LOC103047809
XM_022672987.1 mRNA downstream 128582 24403690 ~ 24407033 (+) True LOC111193225
TU111651 other upstream 129110 24139389 ~ 24142232 (+) True G82853
TU111581 other upstream 350644 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 393575 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 393575 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 1040024 23230430 ~ 23231318 (+) True G82609
trnal-uaa_1 other downstream 31503 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 32243 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 33700 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 35305 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-cag_10 other downstream 552566 24827674 ~ 24827756 (+) True trnal-cag_10

Expression Profile