RNA id: XM_007251961.3


Basic Information

Item Value
RNA id XM_007251961.3
length 1866
RNA type mRNA
GC content 0.43
exon number 2
gene id stx11
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24299171 ~ 24302766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGGAGTTTAGAAGGCTGATCTGGCAACCCGGCATGGACAGGCACAGCACAcagaaaactttaaatattttttatttatttatgtatttatgaaaGCAACCGCTAGACTAATTAATGCACTGCGTTCATTATAAACTGCCCTTCGTTTGTGCTTTTTATAGCTCCAGATTATTATGAAGTGACTCAGTCTAGCCTACGTTTATTTCCTCAGAGATCAGTTTGTTGTAATGCTGAGCAAACCCTGGTCTCGACgaggctgagctgagctgaacaTTCAACCACCACTGCTACTTTCGGAAACTCCCACCAGTCACTTGTCTGCTGTTTCCTGCAACGATGTTAGAGCTGTGAAGAGAGGATTAAAAAGCCTTCTTTAGTTGTGTtttaattctgcagtttctgtaTTGTCCACAGATCATGAAATAAGgAGACATGAAGGACAGATTGTGTGACCTTAATGATGTCAAATCTAAAGTCTCGCAGGAGGAGCAGCTCTCCAAAGAAAATGGAGAGAACATAGACAATGGCGAGCTCGAGCATCTGGCGGTGGTGTTTGAGGGTGAGGCCGAGATGGACGATGTGTTCCGGGAGGCTCAgtcaatgcacaaaaaaatagcccacctccgaaTGGAGGTGAAGAGGCTGGGCAAACAGAACACTCGGTTTCTAACGTCTGTCCGGCGCATCAGCAGCATCAAACGTGACTCTAATGCCATTGCACGCAACATCAAAACAGAAGGGGAGAAACTCTATGCAAGGCTTCAGCAGATGGACACACTGTGTAAAGAGCTGGAGGAAAAACATGGAGCTCACTCTGCTTTAGTGCGCATGGCACGCTCCCAGTACATCTCTTTAACCGGGGCCTTCCATGAGGCCATGTCCGAGTATAACGATGCTGAGATGGCGCAGAGAGAAAACTGCAAGATGCGCATTACAAGGCAGGCAGAGATCATGGGCAAAGAGGTGACTGGGGACCAGATTGAAGACATGATTGAGACTGGGAAGTGGAATGTGTTCTCTGATGACCTTGTCACCGATGGTCGAGCGTTCCGTTCAGCTCTCAATGAGATTGAGAACCGCCACAAGGAGCTCCTGGAACTAGAGAGCCGTATACGGGAAGTTCGTGAACTCTTTTTCCAGCTGGCTCTGCTGGTAGAAGAGCAAGGGGCTATGGTGAATAACATTGAGGCCAATGTGTTTGCTACACAGGAATTTGTAGGCAAAGCTACTATTGAGATAAAGAAAGCTGTGAAATATAAGAAGAAACACCCATGCAGACAGCTCTTTTGCTGCTGCTTTCCGTGTTGCAATAAATgatattgttcagcaccttttCATGCCTTGCCCTTTCACAATCATGCCTTTCACAACAACAGGCCTGTTCACAGACGGCACAGTGGCTTTAAAGAACAGTTAACTGTGCAGTTGAGCATTCATGTGCAAAGCAGCAAGTTACTGTTCTTGCAGAAGGGTTGTGTGGTTTACAGGCCTGAacatttaaccttttttacCTCTTTCTTTGTGCATTTTAATGACTTCCTCATGCTTGGCATATAAAAAGCTGTATGCCGGTGGCCTAAGCTCGATAGGTGTGACCAAAcccagtgtttcttttttttaaccacaagAGCAACAACACGTATTATCTTGATAATGTGTTTTATCACTGTTTTTACTGTGTGAATATTGATGAACATTAATGTTGTGCTGGCTTAAAACCATTCTTATGTACTGCAGTAATGTATACATACTTGTTTCAGTGtgattaaaagtatttaaatggTTTTGTGGCTGGAAAAAAGAGCTTTTATTTCTGTCAAGTagacacaaaaaacagcttataaataatgtatgttattaatat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08487 STX11; syntaxin 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111624 lncRNA upstream 160267 24136576 ~ 24138904 (+) True G82838
TU111583 lncRNA upstream 325196 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 376311 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 383712 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 390563 23908338 ~ 23908608 (+) True G82814
TU111920 lncRNA downstream 11949 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 46675 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 46763 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 54209 24356975 ~ 24367973 (+) True LOC111193226
XR_002650358.1 lncRNA downstream 269562 24572328 ~ 24576551 (+) True LOC111193227
XM_007251958.3 mRNA upstream 24063 24271342 ~ 24275108 (+) True LOC103045657
XM_022672985.1 mRNA upstream 29305 24264445 ~ 24269866 (+) False rmnd1
XM_007251957.3 mRNA upstream 29305 24265734 ~ 24269866 (+) True rmnd1
XM_022672982.1 mRNA upstream 41921 24167119 ~ 24257250 (+) True syne1
XM_007251948.3 mRNA upstream 174056 24113136 ~ 24125115 (+) False ahi1
XM_015606503.2 mRNA downstream 14544 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA downstream 14544 24317310 ~ 24336229 (+) False LOC103045057
XM_007251966.3 mRNA downstream 81112 24383878 ~ 24403591 (+) True LOC103047809
XM_022672987.1 mRNA downstream 100924 24403690 ~ 24407033 (+) True LOC111193225
XM_022672988.1 mRNA downstream 115243 24418009 ~ 24458899 (+) True LOC103021971
TU111651 other upstream 156939 24139389 ~ 24142232 (+) True G82853
TU111581 other upstream 378473 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 421404 23875439 ~ 23877767 (+) False timm9
TU111570 other upstream 421404 23875439 ~ 23877767 (+) True timm9
TU111323 other upstream 1067853 23230430 ~ 23231318 (+) True G82609
trnal-uaa_1 other downstream 3845 24306611 ~ 24306693 (+) True trnal-uaa_1
trnal-uaa_2 other downstream 4585 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_3 other downstream 6042 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_4 other downstream 7647 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-cag_10 other downstream 524908 24827674 ~ 24827756 (+) True trnal-cag_10

Expression Profile