RNA id: XM_007251966.3


Basic Information

Item Value
RNA id XM_007251966.3
length 5695
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC103047809
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24383878 ~ 24403591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAATCAAACACAGTAGCTATTTACCTCTTAAGGTAGAAcacacccccaccccctccccTGTTATAAGCAGACCAACGGTTTGGTCAGATTTTACAACATGGACCGATCTCACACCCGAGAGAGGGCTAAGAATAGACTACGTGGTCTGGAGGAAATGTACTGTAAACTGATACAGATATACTGAGAACTGCATTGAGAAATGAAAGCATGTGTAATTATTTTGcagtctattgtttttttttattattattattttttaatagttcTCCACAGAGATCTGTAAATTGGCTCTGAGTGTGTTTCAGTGGGACCCACACTGCGGCTGATGTGACCCGTTTTCAGATGCAGTGATGAGAGGAGCAGGAGGGGGGCATCGCGCAGTGAAGAGTGAGCTGCAGTTTAGGACGGGAAGGTTTGAGGAGAGAGACGAGATGACTTAATCTCCTGCTTCAGAAAACATAATGATCATTACCTTAGTTTCCAAGATGGCAATGGTTGATACGTTGGACACAGCAGATACCTCCATCGCTTTTTCTCACCAGCAGGCTTGCCTACAGATATGATTCAGCAATACAAGCATTTAAGACCATGTGGAGTATGCCGACAATGTATTTAAAGGCCACTTTAGTCCTGTCGCTGTTCTTGCTGTCTGCATTGGCCAGTAATATCTATGAGAGATCAGTGGTTCCCAGAGCTGCGTCTCGTTCGGTGGCCCGAATGGACGGTGATATAATTATTGGAGCCCTGTTTTCTGTCCATCATCAACCGTCTACAGAGAACGTGGCAGAGAGAACGTGCGGAGAGGTCAGAGAGCAGTATGGCATTCAAAGGGTGGAGGCGATGTTCCACACGCTGGACAGAATCAACTCAGACCCCAACCTTCTACCCAACATCACCCTGGGCTGCGAGATCAGGGACTCTTGCTGGCATTCCTCAGTGGCTCTGGAGCAAAGTATTGAGTTCATAAGGGACTCTCTCATTTCGATCCGGGATGAGAAGGAAGGAACAAAGTGGTGCATTGATGGAACTCCATACAGCCAGCCACCTGCCACTAAGAAACCCATTGCAGGTGTGATTGGACCTGGCTCCAGTTCAGTGGCCATCCAGGTTCAAAACCTGTTGCAGCTCTTCAACATCCCCCAGATTGCCTACTCCGCCACAAGCATTGATCTGAGTGATAAAACCCTCTATAAATACTTTCTCAGGGTTGTGCCTTCAGATACTCTTCAAGCCAGGGCCCTCTTGGACATTGTTAAACGGTATAACTGGACTTATGTTTCAGCTGTGCACACTGAAGGAAACTACGGGGAGAGTGGTATGGAGGCATTTAAAGAGCTGGCAGCTCAGGAGGGTCTGTGCATTGCCCATTCTGACAAGATCTACAGCAATGCTGGAGAGAAGCACTTTGACAGGCTGCTGAGGAAGTTAAGGGAGCGTCTGCCTAAAGCCCGTGTGGTGGTGTGTTTCTGCGAGGGCATGACGGTGCGCAGCCTACTTATGGCTATGAGAAGATTGGGTGTGGCTGGAGAATTCCTCCTTATTGGAAGtgatgGCTGGGCAGACAGAGACGAGGTGGTGGAAGGCTATGAACAGGAAGCTGTAGGAGGCATCACTATGAAGCTTCAGACTGAGGAGGTCACGTCTTTTGATGATTACTTTCTGAAGCTGCGTCTCGACACAAACACAAGGAATCCATGGTTTGCTGAGTTCTGGCAACATCGCTTCCAGTGCCGCCTCCCTGGACACCCTCAGGAAAACACAAACTACAGGAAGAACTGCTCAGGTTATGAAAGTCTGGAGGACAACTATGTGCAAGACAGTAAGATGGGTTTCGTCATAAATGCCATCTATGCCATGGCTCACGGCCTTCACGATATGCACCAGCACCTTTGCCCTGGCTATTTGGGCCTGTGTGAGGCCATGGATCCCATCGATGGCAGTAAACTACTGGATTTCCTGCTCAGGACCTCCTTCGCTGGCGTGTCTGGAGAAGACGTGTGGTTTGACGAGAATGGAGATTCACCTGGCAGGTACGATATAATGAACCTGCAGTTTGTGGAGCCTGGTGTGTATGACTACATTAACGTGGGCTCCTGGCATGAGGGCGTGCTGAGCATTGATGATTATATGATCCAGATGAACCGCAGTGAGATGGTCCGCTCTGTCTGCAGTGAGCCCTGTTCTAAAGGGGAGATCAAGGTGATCAGAAAAGGAGAAGTAAGCTGCTGCTGGATCTGCACTGCCTGTAAGGACAATGAGTACGTTCAGGACGAGTTCACCTGCAAGGCGTGTGAGCTGGGCTGGTGGCCTGATGAAGAGCTACATGGCTGCGAACCTATTCCCCTGCGCTATCTGGAGTGGGGTCACCCTGAATCCATTGCAGCAGTGGTCTTCTCCTGCCTGGGCATCCTGGTGACCAGTTTTGTCACTTTCGTCTTCATCCTGTACAGAGACACTCCTGTGGTCAAGTCCTCCAGCCGAGAGCTCTGCTACATCATCCTGGCTGGGATCTTCCTGGGTTACATCTGCCCCTTCACCCTCATAGCCCGACCCTCATTGGCCTCTTGCTATCTGCAGCGCCTCCTAGTTGGGCTCTCGGCCTCCATGTGCTACTCAGCGTTGGTCACGAAGACCAACCGCATCGCCCGCATCCTGGCAGGCAGCAAGAAGAAAATCTGCACGCGAAAACCACGCTTCATGAGCGCCTGGGCTCAAGTGGTCATCGCCTTCATCCTCATAAGCGTGCAGCTGACACTGGAGATCACGCTCATCATCCTGGAACCGCCAGAGCCCATCAAGTCTTACCCCAGCATTAGAGAAGTCTTCCTGATCTGCAACACGAGCAACATGGGCATGGTGGCTCCGCTAGGCTACAACGGCCTACTCATCCTCAGCTGCACCTATTACGCCTTCAAAACCCGCAATGTTCCAGCCAATTTCAACGAAGCCAAATACATCGCCTTCACCATGTACACCACCTGCATCATCTGGCTGGCTTTTGTACCCATATACTTCGGCTCGAACTACAAAATAATAACCACCTCCTTCTCAGTCAGCCTGAGTGTGACCGTGGCTCTTGGATGCATGTTCACTCCCAAGATGTACATCATCATCGCTAAGCCAGAACGCAACGTGCGCAGCGCCTTCACCACCTCCGATGTGGTGCGCATGCACGTGGGTGACGGCAAGATTGCCTGCCGGAGCAACAGCCTGCTCAACATGTTCAAGCGCAAAAAGAACGCACCAGGAAATGCAAATTCTAATGGAAAGTCTGTGTCATGGTCTGAACCAGGTTCAAGACATCCTCCGAAAGGAGAACACATGTGGCACAGACTGTCTGTGCATGTGAAGAGACAAGAGGCCGGCTCCAATCAGACGGCTGTCATCAAACCTCTAACTAATACCTACAATAACTCAGGCCTGGAGTTTTCAGACCTGAGCACCAAGACTCTGTACAATGTCGCTGAGGAGGACGAGGGGGAGCCGATCAGGTAACCCCCGGTCAGCCCTGCTCTGATTGCTCACAGGCAGTCGCCGGTCTGCGAGTCCATGAAGGAAGTGGCCATAGAGCAGGACTTTTATAAACCTGAGCTGCAGCCTCAGCAACATGTTATTGCAGACCACCTCCAAGAGGTGGCGAGCCAGTTTGGCGCCAGTGTGACTGACCTGGACGACATCATTAGCTTGCCTGAGCCGGACAGTGTGTTCAGGCCTCCGTATCAGCCCCTTATCCTGCAGACCCAGCCCTCGCCCATGCTCATACAGCTGGGCACCTACTCTAAGGAGCCCATCTCCCCACTGGAGGAGGAGATGGAAATGGAGATGGaaatggagatggagaatgaGAATGAGCAGTTCGGTCTCCTCCATGGCTACATGTACGACAATGCACAAATCCACGATGAAGAGGAGCTGGTGCAAATCAAGCTATCCATGGAGGATTCACTAGCTCTCATGCCACCCTCGCCTTTCCGGGACCCTTTTGGCTCTCGAAGGcacatccccaactcccctGTGTCTGAATCCATTCTGTGCACCCCACCCAGTGTAACATACGCATCTGTTATCCTGAGAGACTACAAACAAAGCTCCTCTACTCTGTAAAGGAGCTttcttaaagcaaaaaaaaaagaaaatggcatCCCAGTATCATTCCATATGAAATCAAACGGGAAAAGCAGCTTCACAGCTTGAACAAGCACACCCGAGCTCGAGCACATTTGGAAGAAAAGGGATTTTCTCAGCATTTAATCACTTTACTGGGCTAAAGAATTTTACATCATTCACTTTTGTCAGAATTGATCAAAAAGACTTTCATGAATTTACAACATTGTACCTGTACATGGTCTTAATTATTCTTCATGAAACTCTAGATAGTAGaatttgtgaatgtgatttctactattaatataacattttaaagttcaatattaaaacacagtttgcaATAAGAAAAAGTACCAGTATTAGATATGTTGCCATCATACCTTAAGGCAGCATAGTTATCCTCGTTTGAATATTTTAACATCCACATATGCAGTAATGTAAGTGCAAATAAAAAGTATGTTGTATGTATAAAGTTGatctatatttatatagcaGATGCCTGttaaaatatagcaaaaaaacagattatgtTTAAGTGCCAATGTCAGTGCTATGACGTCATCATGTGTCAAGGTTACATGTTTACAACATAATGACTGTCCTGTACAGATTAACTTtggatgttttatttatttataattatttataagtgCGAAATCCAGCCTGACATATGTTTTCATTTTAGACAAATTCTGACAGTGTCAAACATTGTCTTGCATTTCTTGTTTgcttcttatttcttatttttttctaaaaactaTTATAAGCAACTGTTTTATCACAGAAGTTATCTGCTGTTGAGTGTTTgactgtgttatattaagtgatatatttaagtaatataGTATTTAAGGAAGCACTTCTGCTCAGCAGTGTCACCGACGGCAGTTTCTCCAGAATGTAGCTTAAATCAAAAATATATGGTAAATactcagcatcagcagcatgaCTGGTGTTTTAGAGCATAGGCAGAAATAACATTTGAGTTATAACCTTTTAAGTTGTACTCAAGATGAATATACCTGTTTTAAAGTGTTAAGTGAATATAGAATTTTGTCTTGTATTTGGGTCAATTTTAGAAAgatatttattgattattattggtgtttaataacagattattTTCTGTTTCAGTGCAATATTCTCAGAATTTCAGCAGCTTTTAATAGGCTAGACTTTATAGCTTAGCTGTAACAAAGAGCTGTTGTTCTACTGTATCAAATTGCCCTGTgttaaatcaacaatgttagtgttatattttaagaCTCACAGTGGTAATTTAACACTCAGTGATGATTTAACACTGGACAGTTTCATGTGAACTATTACTAtggatgtatgggtttagaaaaAATAACTCTAAAGCTTCTTATGTTAGCTCATAACCCATAAACCCAGTTTGGAAATAGGATAGTACCATCTGTTCCTTCTGTCCTAACTTTTTTGCTGCCTATTACAATGTAGATATATTGTATTAAGCTACAATATACTTTGTATTTCTTCTAATAGTTAACATTAGTTTGGACACGTTTagaattatgtttttcttagttctgataaattaaatactctgtgttattttgtaaa

Function

GO: NA

KEGG:

id description
K04603 GRM1; metabotropic glutamate receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650357.1 lncRNA upstream 15905 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 33343 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 33401 24349441 ~ 24350477 (+) True G83071
TU111920 lncRNA upstream 68913 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 244974 24136576 ~ 24138904 (+) True G82838
XR_002650358.1 lncRNA downstream 168737 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 216104 24619695 ~ 24619937 (+) True G83116
TU111998 lncRNA downstream 227282 24630873 ~ 24635198 (+) True G83120
TU112002 lncRNA downstream 233015 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 238801 24642392 ~ 24642655 (+) True G83123
XM_015606503.2 mRNA upstream 47649 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA upstream 47649 24317310 ~ 24336229 (+) False LOC103045057
XM_007251961.3 mRNA upstream 81112 24299171 ~ 24302766 (+) True stx11
XM_007251958.3 mRNA upstream 108770 24271342 ~ 24275108 (+) True LOC103045657
XM_022672985.1 mRNA upstream 114012 24264445 ~ 24269866 (+) False rmnd1
XM_022672987.1 mRNA downstream 99 24403690 ~ 24407033 (+) True LOC111193225
XM_022672988.1 mRNA downstream 14418 24418009 ~ 24458899 (+) True LOC103021971
XM_022672989.1 mRNA downstream 14418 24418009 ~ 24458899 (+) False LOC103021971
XM_015606532.2 mRNA downstream 14418 24418009 ~ 24458899 (+) False LOC103021971
XM_022672991.1 mRNA downstream 14418 24418009 ~ 24458899 (+) False LOC103021971
trnal-uaa_4 other upstream 73383 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 74988 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 76445 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 77185 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 241646 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 424083 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 531482 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 626446 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1515966 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1831907 26235498 ~ 26249096 (+) False G83602

Expression Profile