RNA id: XM_022672988.1


Basic Information

Item Value
RNA id XM_022672988.1
length 6893
RNA type mRNA
GC content 0.46
exon number 31
gene id LOC103021971
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24418009 ~ 24458899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGGACAGAAATAACAGCGCGTGCTGGCGGAGCGAAGGGAGGGACTTGTACAGCAGGATTTCGGCTGGATCGGCCGTGTCAGTGCGACGCTACGGGTGGAAAACGACCGATATTTGCTAACGATTTTGTAGCCCGTGCGTTGCAGTATGTTAACTTTGGGCTTGGCGGAAGGCTTAATAACAGCGCCTGACATGTGAGACACAGGCGCGGGGAAGCGAACGGAAGGAGAGCTGGCCGCCTTCTTCCTCTCCCTGGTTCTCTGTTTGGCGATTTGCTCGGTGGATGAATCCTGTCGGGAGGAAGCATGAAGAAGTTTAATATCAGAAAGGTGCTGGATGGCTTGACTGCggtttcctcctcctcctcgtccgCCTCGCCTCAGACGGGGAACAAGGAGAACGACATTATTCAGGAGACTCTGCAGTCGGAGCATTTCCAGCTCTGCAAGACAGTCCGACATGGTTTCCCTTACCAACCATCCGCCATGGCGTTTGACCCTGTGCAAAAAATACTGGCCATTGGGACGCAGAGTGGAGCCCTAAGACTCTTTGGCCGAGCAGGAGTGGAGTGCTACTGCCAGCATGAGTCCGGCTCGGCCGTCATCCAGCTGCAGTTTCTCATCAATGAGGGGGCACTAGTGAGTGTGTTAGCTGATGACAGCGTACACTTATGGAATTTGAGACAAAAGATTCCCGCTGTTCTACACTCTCTTAAATTCAGTAGAGAGAGgattacGTTTTGCCATCTGCCCTTCCAGAGTAAGTGGCTGTACATCGGCACAGAAAGAGGGAACATTCATATTGTTAATGTGGAGTCCTTTACTCTCTCAGGCTATGTCATCATGTGGAACAAAGCCATTGAACTCTCTTCAAAAACCCACCCTGGACCTGTGGTACACATCAGTGATAACCCTATGGATGAGGGCAAGCTTTTAATTGGTTTTGAATGTGGTTTCGTCGTTCTGTGGGACCTGAAATCAAAGAAAGCTGATTACCGTTACACTTATGATGAGGCGATCCACTCTGTGGCCTGGCACCATGAGGGGAAACAGTTTGTGTGCAGTCACTCAGATGGTACACTTACCACATGGAATGTACGATCCCCTGCCAAGCCTGCACAGATCATTACACCACATGGTAAGCAACCCAAGGATGGTAAAAAGCCTGAACCCTGCAAGCCCATTCTGAAAGTGGAGTACAAAACAGCCAGGGCAGGGGAAGCTTTCATGATATTGTCTGGAGGTCTTTCGTATGATACTGTAGGCCGCAGGGCCTGTCTGACTGTGATGCATGGAAAGAGTACTGCAGTGCTGGAGATGGACTATCCTATTGTGGATTTTCTAGCGCTGTGTGAAACTCCCTATCCAAATGATTTCCAGGAGCCTTATGCTGTTGTAGTTCTGCTGGAGAAGGATTTAGTAGTTATTGACCTTGCACAGCCTGGGTACCCTAGCTTTGAGAGTCCATATCCTCTGAGCATCCACGAATCCCCTGTGACCTGCTGCGAGTACTTTGCTGACTGCCCTACTGAACTCAtccctgcactttactctgtGGGCTCCAGGCAGAAAAGGCAAGGCTACAGTAAAAAGGAATGGCCTATAAGTGGTGGAAACTGGGGTCAGGGTGCACAAAGCTATCCAGAGATCATTATCACAGGacatGCTGATGGCTCAGTCAAGTTTTGGGATGCTTCTGCATTAATGTTACAGGTCCTGTACAAGTTGAAAACTGTAAAAGTATTTGAAAAAGCTCGCAATAAGGAAGAGAAGCCCAGCACTGACATAGTGGAAGAAGACCCTTTTGCTATTCAGAGCCTGTCCTGGTGCCCTGAGAGCCGAGTGCTATGTGTGGCTGGGGTCTCTGCTCATGTCCTTGTTTACTGGTTCAGCAAACAGGAAATCACCACAGAGGAGGTTCAGCTGTTGGAAGTACGTATGCAGCCTGAGCTGAATGAAGTAGACTCTCCAGATGCAGGAGGAGAACAGGCTTCAGCCGTGTCCACTCCTGGAGCTTCTTCCAGTCCTCAAACCAGTGACCCCCAAAAACATCCATCTACCAGCAGCAACAACTCATCTGATGGCCTGCGGGATAATGTACCCTGTCTGAGAGTTAGAAACACACCACTGAAGCAGTCTCCAGGCTACCAGGTGGAACTGGTCATTCAGCTGGTGTGGGTCAGCGGGGAGCCGCCACAGCAAATCACCAGCCTGGCTGTCAACTCCGCATATGGCCTAGTGGCTTTCGGTAATAGTAATGGGCTGGCAGTTGTGGACTACCTTCAGAAGACCCTGCTGATCAATGTGGGCACAGCAGAGCTGTACGGCTCCTCTGATCCACATCAGAGACAACCACGCTCACCCCGTAAAGCAAGGCAACCGTCTGGAGACAATCTGCAATCGAAGTCTTGCATGTCCGGCCTCTCTAACTTTTATTCTGAATCTGTGAAAAAACTCCGCTCTTCTTATCTCAGTCTCTGTGATGTCAATGATGGGTCGTTGGGGTCAGAAGACCGGTGTAAGTCACCTACATCAGGTTCTGGCTCACCTTGCCATTCAGATGATGAAAGCAAACAAAAGTTTCTTGAAAGGGTGAAGTCGAAAAGCAAGCTGATATCAAAGAGTGTTGCCAATGACTTTGGCTTTCTGCACAATCTGGTGATGAATTGCAAGGctaagATGTCACGGAAATTTAGCATGGCTGCTGATCAGAAACAAGAGGGGAGGCTATGTCGGCAGCATTCTCTCCCTAGTCAGAAACTTCAGTGTGGTGTGGAAGTGTCCAGAAGAAAAGCAAGAACTATCTCCAGGACTCACATTATGTCTAAATCCAATGCCAGAGACAACTCGTTCAGCCGCTCGCGCAGCTCCAGTGTGACCAGTATTGACAAGGAGTCACGCGAGGTCATCTCTTCTTTGCATTTCTGTGACTGCCTGTCCAGGAAGAGTGAAGTAGCAGCAGTCACCAGCCTGTGGGTGGGCACCTCCCTGGGCACCATGCTGGCCATCTCCCTTAATGTGCCTTCCACCCCAGAGCAGAGGATGCAGCAGACTGTAGGCATCTCTTTCTGTGGTTCAGTGGTTCGACTGAAGGGAGGCATCCAGCGCATGGCTTTGTTGGATTCTACTGGTTCTCTCCAGCCTCCTGCTTACGAGGGCTGGTATGACCCAAACGCCcctgaggaggagaaggagaagacGAGAAAGCGCCGGCCCGCCTCGCCGCCGTCCACTCAGGAAAACCAGGACAGCCACTACGCTGTGATCTGCTCTGAGAAACAGGCCAAAGTGGTGGCTCTGCCTTCGCAGAACTGTGTGTTTGAACACAACATCACAGAGAACTCGTTTGTGCTGAGAGCGGACGTGGTGGTCATGCCTGCTGGCATCTGCATCGCCTGCTTTTGTGCCAATGGTCACATCATGACTCTGAGTTTGCCCAGTTTGCGGCCACTGCTGGATGTAAACTACCTGCCCCTGACAGACATGCGAATAGCCAGAACATTCTGCTTCTCAAACCAGGGCCAGGCTCTGTATCTCACCTCCCCTACAGAAATCCAGAGACTGACCTACAGTCAGGAGACCTGTGATAACTTGCAGGAAATGCTGGGAGAGCTCTTTACTCCAGTTGAGACTCCAGAGGCTCCCAATAGAGGCTTCTTTAAGGGTCTTTTTGGAGGTGGGGCCCAGTCGCTGGATAGAGAGGATCTCTTCGGTGAGTTGGCAGCAGGTAAGGCATCACGCAGCCTGGCCCAGCATATCCCAGGCCCAGGCAGCATGGAGGGCATGAAGGGGGCAGCGTCAGGAGTGGTGGGGGAGCTGGCGCGTGCTCGGATAGCTCTGGATGAGAGAGGGCAGAAACTGGGCGAGCTGGAGGAGAGGACAGCAGCCATGATGGCCAGTGCAGACTCCTTTTCAAAGCATGCACATGATGTGATGCTGAAATACAAGGATAAGAAGTGGTATCAGCTCTGATGGCTGTGCAAGAAGTTGGGGGGCCTTTGCCTTAAGGCAGTAGATATACGCCACTTCTCTCCCCCTTCTTTCTCCTGCGTCTGCCATCCTTGCCCAGTACAACACCACACTGTTACCTCAGTCACCTGACTCAGGCTGAGGGGCAGAAGGGAGACCCAGGATGGAAGAAGGTGGAGACCGAAAGAACAGTTTCATAAGGGGCAGACTATCAGTCACTTGGCAGTGTCTGAGACGTTAAGCTCCACTCCGCTACCGCAaagatgttattttcagttacagGAGAGGAGACTTGATGCAAACGCTGCACTCGCAACTCACCCATCACCTATGCTGTCATTTTTCACTGCCATTCTACTTACAAAAACTTCAAAACAAAGGATCATGGTGATATTTATATACGTTAGTTGAAAGTACAGCTGAGGAATACAGGAAATGTCTGCAGCATTGCCAGGCGTAATGCTACTGATAATCATTCGCTTGGGCAAGAATAAATGGCATGTCCAGTGACTTAATTTATTGAAACCTAGCATTTTGcattccatttttttatgttttaagtaagCATGGAGTAAATGACAGTATCCTAGAAGATGTGATAGggtcattaaattaaatatctgAAGGGCTGGTAATGTGTTGCAATTGCCATGAACCATATGATCATTCTGACCACATTTAAATAGTGTCAGTGAAATCATGTTTATCTCCCACTGATTAGATTCCAAAAGTCCACAAAAAGCCAAGATCTCGCACATTTACACTCCCAATCTGTTAATGCAGGCAGGCAGTATATATCCAAATAGTTAATAGGGAAAATGAACTTAGCATGGTTTACTCATTTGCTGAATATTTGAACATTTCAGAATGGTTGCATATCATACACTGGATAAATGTATCTGATACCTGGAGCATGTTGGACTATTCCTATCCATGTGAAGAGAATTAAGATTTTTGAAGAGTGAGGCATGACTCTATGTGCCTTGTGAAATGGATATACTAGACGTGTTCACTTCCAGGGAAGCGTTTGCCAGTTGGTAAACTGAAGAATGTTCCTATTTTCTCATGCTTCAGCTTCTGGGTCAAGTGCTCCCATAGAGTGTCTCACTGGCCAGCTACAAAAAAGGTCATCCCTACTGTTAGGCTCCAGTACAGGCCAGGCTCCTTGCTGCAGTCAAAACTCCCTCTTTTTCTGAAAGAaagaacataaatatatatatttatcttttgtCCAATGTCCATTTTTCCCCAGAGTTCTTTCTTTGGAAAAATGCATGTCTCGTCTGGAGGACTATAGCCATCTGTGTGTTTGTCGTTGCGGTGGAAATGACCAAGCGCCACTAAGTGTTCAGTGCAACTCCATGCTCTTGGTCAGCATTCTCTCAGTCTGTACAGGAGAGGGAGAATTCTCTTTTGCCTTTTGCTTATCATGCAAATATGCCAACCTCgaactacatatatatatatatacatatatatctgtGTGTTGGTGAACATACATATATGCAGGAATATGTGTATGCTCACTTATGGTTATGGAAATGCCATACGTCTTTTTTTCCTGTGTGAGGTGCAAGAAATTGCTGCTATTTCTGTTCATTTAGGagcattattttttgttctttatttgtgaATGAAGAGCAaggcttttattttctcttttcaaactgctgccaaaTGTTGTAAATAGTTGGACTTCTGAAGACAAATTTGAGAGAGGTGGCATGATGGAATAGGCTGGGGATGGATGCAATGTTCTTGTCTGACACCAAAGAGTTTCGATTGTCGTTCTCGTGTCCAGAATGCGAGGGTTTAACCTGCTGTTTAGCTGTTCTGCTGTAACTGAGAAACTGGTGTCAAGACCTCCCTAGAAATGCAGTGAGCCACTCCTTTGCTTGCCGTGACGTTTGTGTAAATATCTACCAAAATAGAGAATTTTCAACAATGACCGAACTGAAAAATGAATTACGCTACTGTGCTtcatattcttctttttttgtataaGCAATTGTGTGGTTTTGCACTATATGTTTTGTATTATAATGACATGAAAgtcattttattgatatttttgtagtttgtatTGTAACTATTTTTTGGCATTTGTTTCTTTCAGAAGGACCAAAAAATGAGAATGCAAGATGTAGAAATGTGGTGATGGCAAGCTTCAGGAGTGTCTTTTACTCTCAGATCTGTCTTCATTGTCagtttaatgatattatatttatatatttggaaaatatatatatacttttaatttcagatatttACAGATGAATACttttagtatattatttaaaaagagaaTGGTGCATTTTACGATGATGAATTAGTTGTATATATTCTCTGTAAATCAAATATAACATTTGAAACGCCTTGGATGGTGGGCTAACAGCATGGTCATGAGTTGAAGGAGGAGCTGCTGCGGTCTAAGGAAGTGTCTCTGGCCATCTCTGTATACTGTGTGTCCTACAAGTTTCTTGCACAAAAGAGGCAGCATGATATTTAGTGTTTACAAACTTGAAATGTCCATTTATGTATACCCTTTATAGGAAGAGTCTAATTTTGGAATCTGCCAGAAAAATGTTTGATGAGAACAAAATCATGtatctttttaattttctcagtAGGATATGAAGGAGCATATTTATTTCATCTGCATTGTTGCGGTTTGAATCGGTCGGTGTGAGAATACCTAGCCAACGGATCTCCTTAAAGCCCATACTGTTCTGTTCCTTGGGTGGGTCTCTTTTCTGTAACATTCTCATTATAGCCAAGTTATTGTACAGTTTTATTAAGCAAAATTTCACATGGTTGTTTGTCTTAATATGCTGCCACCTACAATTTAGGAAACATGTTAATAAACCTAAATGtgcaatggaaaaataaatgtaaagcaaAGGTCATTTTTGCTAATGGTTTTAA

Function

GO: NA

KEGG:

id description
K08518 STXBP5, SRO7_77; syntaxin-binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650357.1 lncRNA upstream 50036 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 67474 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 67532 24349441 ~ 24350477 (+) True G83071
TU111920 lncRNA upstream 103044 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 279105 24136576 ~ 24138904 (+) True G82838
XR_002650358.1 lncRNA downstream 113429 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 160796 24619695 ~ 24619937 (+) True G83116
TU111998 lncRNA downstream 171974 24630873 ~ 24635198 (+) True G83120
TU112002 lncRNA downstream 177707 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 183493 24642392 ~ 24642655 (+) True G83123
XM_022672987.1 mRNA upstream 10976 24403690 ~ 24407033 (+) True LOC111193225
XM_007251966.3 mRNA upstream 14418 24383878 ~ 24403591 (+) True LOC103047809
XM_015606503.2 mRNA upstream 81780 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA upstream 81780 24317310 ~ 24336229 (+) False LOC103045057
XM_007251961.3 mRNA upstream 115243 24299171 ~ 24302766 (+) True stx11
XM_022673000.1 mRNA downstream 1675 24460574 ~ 24551484 (+) False LOC103022677
XM_022672999.1 mRNA downstream 1689 24460588 ~ 24551484 (+) True LOC103022677
XM_007251974.3 mRNA downstream 1689 24460588 ~ 24551484 (+) False LOC103022677
XM_007251973.3 mRNA downstream 1689 24460588 ~ 24551484 (+) False LOC103022677
XM_022673001.1 mRNA downstream 1689 24460588 ~ 24551484 (+) False LOC103022677
trnal-uaa_4 other upstream 107514 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 109119 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 110576 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 111316 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 275777 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 368775 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 476174 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 571138 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1460658 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1776599 26235498 ~ 26249096 (+) False G83602