RNA id: XM_022672999.1


Basic Information

Item Value
RNA id XM_022672999.1
length 5374
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC103022677
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24460574 ~ 24551484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAATTTAGCGACGAGTGAGCTGGAGAACACAGCCCGGAGAGGCTGCTGCTTTCTGCTGGAAGACAGAAGAGGAAAGTCCAGACGTCTTGTGTGAGATGAGGTGGAGTCGTCAGGATGTAGAAAAATGCGAAGAAACTGGTGAGAAACACCTCAGTGTGCAAAACCAGGCGTTTACTCACTTTAATACCAACACAGGCGGTGAGGAGCAGTAGGAGGAGCAGTGAGCGGTGGAGGACTTTCTTTCTAATGGATATATtttaactgactgactgagagGACGCGGATAAGTTGTGTTTGGACTGTTCTGGGGAGAAACATTAGgataaataactaactaacgAGGTTGGTTAAAAGCTTTCTAGTCGTTTGACTGGACTAAGACAGTGTGTTTGAAGTTTTCTCACGGTGCCAGTGCTTTTTTGAGGGACTAAAGTTTCCATTAAATTAGCTATAAAATGTAAGTTAGAGGAAGGACAGGTCCAGAGGTCAGTGctgcactttatttatttatttttgcctgTTTTGCCTTAGAAGTGCCTTGAACGCACGCTTTcggtgtttttgttttgtaaacacacttacactcactttcCTCCCAAAGATGATGGACCTGCCGGGACCAGGCTCGTTTTaaacagcaggaggaggagaagacgCAACAGCAGCACCCAGTAAAATGCtatgaggtgaggtgaggtgaggagACTGGAGAGAACCATCACTGATGCCTGGTGGACACTCACTAACTGTGAAACAATGAGCAACGGTCCCAATATTGTCTACGAGTGGCTGAAGACCCTCCAGCTTTGCCAGTATGTTGAGGCGTTTGTGGATAATGGCTACGACGACTTGGAGGTGTGCAAGCAGATAGGAGACCCTGACCTGGACGCTATAGGAGTCTTCAACCCTCACCACAGGCAAAAGCTTCTCCGTGCAGTGCGCAGACTGAGAGATGAGGACAAGAAAGTGGCCCTAGGACTTTACTTCACTTTAGAACCTCTCCCTGGTGTCCCCAGTGCCGTGCACTCCTCTCAGGTGTGTGACACTGAAGTAAAAGACTCAAAATCATGGGTCACTCCTGCCTGGAACAGAAGAGGACTCAGCCCAGACTTTGGGCTtccaaataataacaataatagccTCTTGCTTGAACACCATATGGATCCAGTGACCTACCCTAAACTCAAGCTGAAGATTCTGATCCGAGACAAACTCGTCAAGGATGGTATCGACCTGAGCAAGCCCCCCTACTCATTTAAGGATGGCTCTTTGGGAAACATCGAGGACCTGGCCAAGGAGTACTCTGAATATTACAGCACCTCTTACAGTGACGTGTGTGAGAGGATGGAGGAACTTCGAAAGCGGAAAGTAACTCAGGAGGCCGAAACGAAAAAGGCTGAATCAACCTCCACATCTCTTCAGCTGCGCTCAGAAATCCAGGAGTCGCTGGGTCTGAGTGGTGCTGTGTCCCCTCATGAGGTAGAGAGAAGGCTTTCGATGCACAAGTCAAGTTCTGAAGACGGGTCTGGAGGGAGATGGGACtccagaaagaaaaataaatccttctGGCAAAATTTCCGCAAGACACAGAAAGGCATAATGCGTCAAGTGTCAAAAGGTGAAGACCTGGGCTTTGTTGCCAGTGAGATCACAATGAGTGATGAAGAGCGGATCCagctgatgatgatggtgaaggAGAAGATGATCACAGTGGAGGAGGCCTTGGCTCGGCTGAAGGAGTATGAGACCCAAAGCAGGCAGTCATGCAACACAGACCCAACCGTGTGGATGGACCCCTCCAGTCCCTCTCTGAACGAGTCCTCCAACTGTGATTCACGGGAACAGTCAGACGATGAACTGGAGGAGTCGCTGGCTTTTCGCAGACTGCACAAATTGGTCAACTCAACCCGCCGTGTGAGGAAGAAGCTCATCAGAATAGACGAGAACAAAAAAACCATTTCTAAAGactctgagGTCACTTGTGAAGACAACTCCTCTCTGTATTCTGGGGTGCAAAAGCGAGTGGTCCAGGGTGATGGACTGGCCTCTGTTCTGCAGGAGCAGCTCTCTGTGGATGGAGATTCAGACAGCTTGACCACCTCACCCTCCTCTAGCAGTCTGGATACCTACAACAGCCACAAACTCTTCAAAGCCTTCAGCAAGTCCAGCAGCAGTCAGGGTTTGGGCCAGATGCCCTCAGGCCCGAGTGGACCTGTCCCAGGGCTTGATGCGGGCAGCGGCTCCTCTTTCTCTGAGGCAGAAGGCTGCAGTGAGGATCAGCCTAGGATGGCCCGCTCTGTAACTGATGGAGAGATGAGACGATCCCTAAGCCCCTCCAATTACCACGGAAGGGCCTGTAGCTTCGGAGGGTTTGACCTTGTGAACCGGTCTATATACATGAGGGAAAACAGCTGCGACCCGAATCAGATTGAAAGCGGAGACAGCATCAGGAGGGATACAACGAGGTCACCCACTCCATCCCGCATTTCTCTGGGGAAGAAGGTGAAGTCGGTGAAGGAGACCATGAGGAAACGCATATCCAAGAAATACAGCGCTGCCCTGTCTGAACAGTCAAGCCCAAGCAGAGAGCCAGGCTCACCCCAGTCCCCGCACACACATACTGACTCTCTGGAGAAACCCAAACTCAAGGCTGGAGGCTCTGTCGAGAGCCTGAGGAGCTCACTGAGTGGCCAGAGTTCTATGAGCGGTCAGACAGTGAGCACCACAGACTCCTCAGCCAGTAATAGGGAGAGTGTGAAATCAGAGGATGGTGATGATGACGAGCTGCCATACAGAGGGCCTTTCTGTGGCAGAGCCCTCGTGCACACAGACTTTATCCCCAGCCCATATGACACAGACTCCCTCAAACTCAAGAAAGGTGATCTAATAGACATCATCAGTAAGCCACCCATGGGAACGTGGATGGGCCTGCTGAACAACAAGGTGGGCACCTTTAAATTCATCTATGTAGATGTTTTGAGCGAGGAAGAGGAGAAGCCCAAGCGCAGCAGCAGGAAGAGGAGGCAGAGCCGGCCACCCAAACCCACATCTGTGGAGGAGCTTCTGGAGCGCATTAAACTTAAAGAGCACATGCCCACGTTCCTGTTTAATGGCTATGAGGATCTGGATACATTTAAgttgctggaggaggaggacctGGATGAGTTGAACATCAGAGACCCTCAGCACAGAGCAGTGCTGCTTACTGCAGTGGAGCTGCTGCAGGAATATGACAgtaacAGTGATCCTGAGCGTGGAGGGTCATCGGGTTCTGAAGAGAAGGTTCTGTCAGAAAGTGGAGCCCCCCCAGACTCCCCCCGTGACTCTGGCTGCTATGAGAGCAGTGAAACACTGGAGAACGGGAAAGACAAAAAGGCATCTCATTTAAGCAGGTCTTCATCAGGCTTCGAGTCCAGTCACCTCCCATCGCCTGAGTATCCAACCCCACCCCCCAGCCAGTCCAGTGGGTCTACCATTCGCAATCCACAGTCTCTTCTGCTCACTTTTCAAACAACCACTGTCAAAGATATTCGCTTTGGTTTGGGCCACTGCCTGCTCAGAGCAAAGCACCTCAGCCACAGCTGTGATGCACTGGTTGGCCTCTCTGCTCCTCAAGGGTTGTGGAAACGCTGTCTTTCCCTGGACGACCTTCTGCAGGATCGGATTCTCCACACAAAGTACCCAGAAGACCTGAGGCCTGCAGATTCAGGGACTTGTGATGGTGCAGTGCAGAGGCAAAGCCCTGCTGAGATACATGGCCTCACTAAAACTGAAAGCACAGAGCTAGGTGCAGATGATGAGCTGCCTGCTATTTCTCCTTCTGTTAATCCCATCACAGCAGAAGTAGAGGCTCATGAAGACACTGCAGTTGCAGAAAATGCTCCATTATACACACATCACATAAAGCCACCAGTTCCTCCCAAACCTCTACCACTGCCCTTCACTAAGGGTAAGGAGACAAGCCCTGATGTTGCTCCATGGTCCAGTAAACTCTTCATGCAGAGGCTTGGGAAGAAACCTCAGCACAGCAAAGCAGCTGATCTGGAGTCACTTGTTGAGGAAAAACTAAGCTTGGATGGCATTGACCTCACAGAGGAGCCCTTTTCTGATAAGCATGGCCGTTATGGGGTCCCCTTGTCCCTTGTCCAGAGATACTCTGAAGATTTGGACAGGCCATTGAGTGATATTGCAACAGTCTTGGATGAGATAAGAGTCCAGCAGCTTCGGAAACAGCACCGCATGGCAATCCCACTGAAAGGTTTATCAGAAATTTGTGTAAAGCTGTAAATGCTTGAGCACACAAATGCTTGAGCAATGCTGGATTTTCTGCCTTCTGGATGAGATCTTGGATACAGCACACATTCTACAACTGGGAGTGGATCATACAAccactgagagaccacaatgcCTGCCTTGAATGCCATCATGAATATAAATGCAGAAAGACTGACATCAGAATGTTTGCCTGGGACAGTAATTCATAGACTGTTGTAAAGGaaagctgtatatttttaagtacTAGTGAAGCCAATTAAGATTTACAGAGAAAGAGCAGAGAACTCtcagtttttctctctctcttcttgggCAGAGGTTCAGATGGTTTTTGGTTTTAGCGTACTCTGTTTGGAAACATGTAGTTGTAATGTTTCCAAATTAGATGAAAGTTTCTTACATTACATAATTTACAAATcatgcaaacaaataaacagtgttgTGTTTAGCCAGGGATTTTATGCAGAGATTCCCCAAAACTCAAACTGATTGTTTAGTAGGATGTTATGAATTGTGAACTACGACGATTACCTTTCAAATGTAAATACAGATTAGGAGCTCTCTGTGATGAATTGTGAATttgcatttgttttaaaatgtctttagtTTCATTTGGGTTGAAAATGAATAAACTGATGAGTGCGACTgatttatagaaatattatGATTGTGATTGTGTAAGGCAGCACATCAGGGGCTGAAATTGCAGGCTGCTGCATATGTAGCAACTGAACCTGAGGGGAAAAATTGTTGTATCCGTGTCAAAGccatgtttactttttttttttttttttttttttttttttaacaaactactTATATGTTGGGTCTCTGCATTTATTTCTGCTGGCAAGCTTGTTATCTGCTGGCCTTGTCTGCTATACATGTCCTTAAACTGTTTGAATGTCAAactgaatatttattttctgttttagtgTAGCCTTTGATCATACTCAGTCTCATTATGCTCCTGATTTCTAGTGAAATGCTTCTGATATGTAGAATGACATCTGATACATAAATACATGCGAGTGTGTGGACTGTAAAAATGGGGTTAAAATTCCTTTTCATCAACAGGAtaataaaaatgacaacaaa

Function

GO: NA

KEGG:

id description
K23705 SASH1; SAM and SH3 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650357.1 lncRNA upstream 92615 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 110053 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 110111 24349441 ~ 24350477 (+) True G83071
TU111920 lncRNA upstream 145623 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 321684 24136576 ~ 24138904 (+) True G82838
XR_002650358.1 lncRNA downstream 20844 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 68211 24619695 ~ 24619937 (+) True G83116
TU111998 lncRNA downstream 79389 24630873 ~ 24635198 (+) True G83120
TU112002 lncRNA downstream 85122 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 90908 24642392 ~ 24642655 (+) True G83123
XM_007251969.3 mRNA upstream 1689 24418009 ~ 24458899 (+) False LOC103021971
XM_007251978.3 mRNA downstream 458 24551942 ~ 24560699 (+) True LOC103024245
XM_022673002.1 mRNA downstream 25406 24576890 ~ 24590451 (+) True LOC103025610
XM_007251989.3 mRNA downstream 92206 24643690 ~ 24656092 (+) True LOC103027217
XM_022673008.1 mRNA downstream 119138 24670622 ~ 24673463 (+) True LOC111188244
XM_022673007.1 mRNA downstream 121956 24673440 ~ 24679240 (+) True LOC103027511
trnal-uaa_4 other upstream 150093 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 151698 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 153155 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 153895 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 318356 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 276190 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 383589 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 478553 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1368073 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1684014 26235498 ~ 26249096 (+) False G83602

Expression Profile