RNA id: XM_007251978.3


Basic Information

Item Value
RNA id XM_007251978.3
length 1616
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC103024245
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24551942 ~ 24560699 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagaggtgtAGTTTGCAGTCTACATGTGGGTAAAAAATGGctctgtaatttgtaatttgacaCTTCGGTTTCAGAAAGGCGCACAGGTCTCTCAGAAGCCTGGCAGAAGTGTTTGGTCCCCTTTGCGGAGTAACTGCCCCTCTTCTCAGATTGGAAATCTTCATCACTGCGAATGGGTCACAGCCATTCCCACCGTGTAGTGAAAACATGGCGAAACACACTGGAATTAATAACTGCCACAAGACCTATATCCGAGGGAAAAACCGGAGGGGGAACTGGCTGGCCGTTATTCTGCTGAGGGTTTCTCGGCGGGATTTTGGACTGTGTCTCAGCACGCTGCTGCTCTTCTGTTTGGGCTCTGTTTTGTGGCAGTTAAACGGAGGACCACCTCAACTTCTCCTTCATGTTCGTTACTACTTCGGGAaatcaacatttcttgatgaccATGGACCCTTAGCATCCAGAgCTTTACCTTTCCCAAGTCAGGTTGTATATAATCGAGTTGGGAAGTGTGGGAGTCGTACTATTGTCCTGCTGCTTCGTATTCTAGCAGAGAGAAACCAGTTCACCCTCATCTCATCAGACATCCACAACAAGACCAGACTTAGCAAGCATGAACAGATGAATCTGATGGTTAACATCAGCAGTGTTCCACAGCCGTTTCTGTACACTCGTCATGTTCATTTCCTCAATTTCACCAGGTTCCACATAGATGAGCCGGTGTACATCAACATCATTAGAGATCCTATCAGCCGCTttttgtccaattactttttCCGGCGCTTTGGGGActggagaggagaagagaatcATGTTGTCCGAACTCCAGGAATGAAGGATGATGAGAGATATCTAGACATTAACACTTGCATTTTGGAAGGTCACCCTGAGTGCTCCAACCCCCGGCTCTTCTACATTATCCCTTATTTTTGTGGACAGCATCCTCAGTGCAGGGAGCCAGGTTTGTGGGCACTGCAAAAGGCTAAGGAGAATGTGATGGAACACTACTTGCTGGTGGGGGTACTGGAAGAGCTAGAGGATGTTCTACTTTTGCTGGAGAGACTCGTGCCTCACTTCTTTTCTGACGTTCTCAACATCTACAGAAGTCCAGACTACAGGAAGTTAGGAAATATGACAGGAACTGTACACAAACAGACGCCAAGCCTAGAAGCCCTGCAGGTGCTGTCTCAACGTATGGACTATGAATATGAATTCTACAGGTTTGTCAAAGCACAGTTCCACATCACAAAAAGGAAATTTGGTTTAAGGACAAAACCCCAGCCCCAAAGGCAAAGTGCCAGCCTGCATCACAGGGAAGAACAGGAGGAGCCTGGTGAAACTGTTTTGGAGAACTGGGAAGTATGAACTACATTTCAAACAAGAAGAGTGTGTTATGAACAGAGCAGCTCTTCCAGAGATGACAGACACAATGTGCTGTCTTCAGGATAAGCAAAAGAACTGCAAAATCAATACAAACTGTTTCAATGAagcaaaaataatttattaaatttgcaCTTGCTCAAAATGCTGCAGTGTTCTTCACATTCTTcacattatttatatacatttttttaaagtgcatttACATTCACTCACAGTAACATTAAAgtgctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650357.1 lncRNA upstream 183969 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 201407 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 201465 24349441 ~ 24350477 (+) True G83071
TU111920 lncRNA upstream 236977 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 413038 24136576 ~ 24138904 (+) True G82838
XR_002650358.1 lncRNA downstream 11629 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 58996 24619695 ~ 24619937 (+) True G83116
TU111998 lncRNA downstream 70174 24630873 ~ 24635198 (+) True G83120
TU112002 lncRNA downstream 75907 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 81693 24642392 ~ 24642655 (+) True G83123
XM_022673000.1 mRNA upstream 458 24460574 ~ 24551484 (+) False LOC103022677
XM_022672999.1 mRNA upstream 458 24460588 ~ 24551484 (+) True LOC103022677
XM_007251974.3 mRNA upstream 458 24460588 ~ 24551484 (+) False LOC103022677
XM_007251973.3 mRNA upstream 458 24460588 ~ 24551484 (+) False LOC103022677
XM_022673001.1 mRNA upstream 458 24460588 ~ 24551484 (+) False LOC103022677
XM_022673002.1 mRNA downstream 16191 24576890 ~ 24590451 (+) True LOC103025610
XM_007251989.3 mRNA downstream 82991 24643690 ~ 24656092 (+) True LOC103027217
XM_022673008.1 mRNA downstream 109923 24670622 ~ 24673463 (+) True LOC111188244
XM_022673007.1 mRNA downstream 112741 24673440 ~ 24679240 (+) True LOC103027511
XM_007287815.3 mRNA downstream 121487 24682186 ~ 24685860 (+) True ankrd66
trnal-uaa_4 other upstream 241447 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 243052 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 244509 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 245249 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 409710 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 266975 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 374374 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 469338 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1358858 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1674799 26235498 ~ 26249096 (+) False G83602

Expression Profile