RNA id: XR_002650359.1


Basic Information

Item Value
RNA id XR_002650359.1
length 2105
RNA type misc_RNA
GC content 0.41
exon number 14
gene id LOC103026430
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24630879 ~ 24635881 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTGAATACCAAGATGGCGGCCGGCAGGGCGTCCTTGGTGTCTGTGAGCGTTCGCtttctgtttaataataatattcagataGCAAAGATAGTATCAGCCCCTCAGACTGCCCTCAGCGCTGCCAGGCGAGGATTTGCATCAAGTGTACTGTCTCAGCCCATTGAAGACAGTGTTCCAACAAACATTCCTAGCCGTTCTTTTAGCGGCCCTTTAGAACATTACAACAATCTAATCCAGAGTGGATTATTACAAGAGGACCAGCAACAAAGAGCTGTTCTGCAAGAATTAGATCTTATGCAGAAGAAACTCAAAGGATACAACAACCATCCCgagtcttttttttccaaaCTATTTTCTAAACAGAAACCACCAAAAGGCGTCTATATTTATGGGGATGTAGGCACTGGTAAAACTATGGTGATGGACATGTTTTACAGTCATGTGGAGATGTCGAATAAAAAGAGGGTCCACTTTCATGGATTTATGATAGATGTACACAAAAGGATTCATCGCCTAAAACAGAGCTTGCCCAAGAGAAAGGCAGGGAAAATGGCAAAAGCCTATGATCCTATTGCACCAGTTGCAGAGGAAATCAGCGAGGAGGCTTCCTTGCTATGCTTTGATGAATTTCAGGTCACAGACATTGCAGATGCCATGATTCTCAAGCAGCTCTTCGAAAACCTCTTTCTCCATGGTGTTGTAGTTGTCGCCACATCCAACAGACCTCCAGATGATTTGTACAAGAATGGATTACAGAGGGTGAACTTTGTGCCGTTCATAGCTGTGCTTAAGaaCTATTGCCGAACACTTCGTCTAGACTCTGGAATAGATTATCGCAAAAGAAATCGGCCTGCAGCGGGGAAACTCTTCTACCATTCCAGTGAGGATAATGTACAGGCAACACTGGACAAGCTCTTTGACGAATTGGCATTCAAACAGAATGATATAACCCGACCCAGACCTCTGAAGGTGCATGGTAGGACACTAACACTGAACAAAGCATGTGGGACCATTGCAGACTGCACTTTTGAGGAGCTGTGTGATAGGCCTTTAGGAGCCAGCGACTACTTAGAAATGTCCACAGTGTTTGACACAGTGTTTATTCGAAACATACCTCTACTGACTTTGAATAAGAAGACCCAGGCCAGGCGCTTCATCACACTTATTGATGCATTTTATGATCATAAGGTGCGCGTGGTGTTGGAGGCTGAGGCACCACTAGAGGAGCTGTTTGTAAATGAGGGACACCACGAGGATGAGAGCCACATCTTAATCGATGACCTGGGCTTAAAAAGGGATTCGGCAAGTTCACTATCAATCTTCACAGGAGAGGAAGAAGTGTTTGCTTTTCAGAGGACAGTGTCTCGCCTCACAGAGATGCAGACAGAAGAGTACTGGGTGGAAGGTGATCGGAGCTCTTCATAGCACACTCCAATACAGACTGAATATTTCAGTGGATGCCTCTTATCAGAACACTATGAACAATATTTTAATCAAAACTTTACACTGCTCTGCTGCACTTTATATTTTGGACATCTTTCTTAAAAGGAATGAAAGAAGGGTCTTGCCAGAGACTTGCctttaagaatatatttattactttatcaTCTCTACTTACTCTAGTATATTCCATATACAGTGTTAAGTCAAGGTACAGGTGCAGAAaaggtttaaattatttttactcaTTGCTTGACTTTTTATCCACaggttataatttattttattacataaatgGGACAAAACTCCTTTCTGTAGCTGTTTAGCAGACAtgaattttctgtatttaaatgACGCACAAATGCAGAAGAggtattttaagcatttaatattttaagcatcCAGCATTTGTCTTGGATTTTGATTTGATCATTTTGTGGCTTTATGTGCCAAATTGGTTAATTTCCGTTTTATCTTATGACCATTTCCAGACTGAAGGCTGGTTTTCTGATGGTGCCTTTTAGACTGATGTATGCAAATGACCTTTGTTATGTTTGGCTGCCCTGTGTTGTGTCTTATTTTGAAAAAACAATTAGAGCTGGAAAGGTGTTAAACAAGTGGTTATGTTTTGTCGGAAATAAACTTAAGCCACTTGTCTCTTGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112129 lncRNA downstream 38190 24588941 ~ 24592689 (-) False cunh6orf183
TU111902 lncRNA downstream 355789 24271440 ~ 24275090 (-) True G83059
TU111817 lncRNA downstream 614577 24012951 ~ 24016302 (-) False G82991
TU111788 lncRNA downstream 624053 23939918 ~ 24006826 (-) True G82971
TU111735 lncRNA downstream 869952 23713953 ~ 23760927 (-) False kiaa0586
TU112175 lncRNA upstream 100823 24736704 ~ 24740999 (-) True G83254
TU112174 lncRNA upstream 101768 24737649 ~ 24740999 (-) False G83254
TU112153 lncRNA upstream 128015 24763896 ~ 24764321 (-) True G83236
TU112183 lncRNA upstream 130054 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA upstream 130054 24765935 ~ 24769310 (-) False G83259
XM_007251985.3 mRNA downstream 1324 24620659 ~ 24629555 (-) True LOC103026113
XM_007251982.2 mRNA downstream 14263 24589864 ~ 24616616 (-) False cunh6orf183
XM_007251981.2 mRNA downstream 14263 24589864 ~ 24616616 (-) True cunh6orf183
XM_022672998.1 mRNA downstream 14263 24590760 ~ 24616616 (-) False cunh6orf183
XM_022672997.1 mRNA downstream 14673 24589864 ~ 24616206 (-) False cunh6orf183
XM_022673006.1 mRNA upstream 18840 24654721 ~ 24669978 (-) False LOC103026721
XM_022673005.1 mRNA upstream 18840 24654721 ~ 24669978 (-) False LOC103026721
XM_007251987.3 mRNA upstream 18840 24654721 ~ 24668542 (-) True LOC103026721
XM_015606493.2 mRNA upstream 48449 24684330 ~ 24698963 (-) True LOC103028568
XM_022672483.1 mRNA upstream 64031 24699912 ~ 24712425 (-) True LOC103028045
TU111816 other downstream 613223 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2006170 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2552018 21946740 ~ 22078861 (-) True LOC103042297
TU111061 other downstream 2552018 22074306 ~ 22078861 (-) False LOC103042297
TU110624 other downstream 3678138 20912971 ~ 20952741 (-) True LOC107197695
TU112362 other upstream 401354 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1356618 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1798591 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3198901 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3708708 28344589 ~ 28356545 (-) True G84215

Expression Profile