RNA id: XM_007251989.3


Basic Information

Item Value
RNA id XM_007251989.3
length 2839
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC103027217
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24643690 ~ 24656092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCCGCGAGAAGGAGACGTGCGTGTACCGTGTGCGCAAACTCCATCGAGCCAGAGCTGCAGCACGAGTccgagaggagaggagaggaggagagccATCTCCGAGGAGCTGGAGAGGAGAGCCATCTCCCAGGAGCTGCCTGAAAAAACGAGAAACCAGGAGAGGAGGCGCACCGACACTCACACACTGCTAAAGCGTTGAGCGAGGGGGCATCTGGGGGCTTTAGCTTTGCGTGCTTTCTGCCAGGCTCCTCCTGACCGTGCTTCTTCTTCATTCAGCACCGACGCTCGCTCACCCTCTCTCTGCTCATCTTCAGCAGCCTCTCCCAAACTCCGGCGAGATCATGGGGAAACAGAACAGCAAGCTTACCCCTGAGGTGATGGAGGACCTGGTGAAGAACACAGAGTTTAATGAACATGAGCTCAAGCAGTGGTACAAGGGGTTTCTGAAAGATTGCCCCAGCGGTAAGCTAAACTTGGACGAATTCCAGCAACTGTATGTCAAGTTCTTCCCTTATGGTGATGCATCAAAGTTTGCACAGCATGCCTTCAGAACCTTTGACAAGAACGGGGACGGCACCATTGACTTCAGGGAGTTCATTTGTGCTCTGTCCATCACATCACGGGGAAGCTTTGAGCAAAAGCTTAACTGGGCCTTCAACATGTATGACCTAGATGGGGATGGAAAAATCACTCGAGTAGAGATGCTGGAAATTATAGAGgcTATCTACAAAATGGTCGGCACTGTGATCATGATGAAGATGAACGAGGACGGGCTGACACCAGAGCAGAGGGTGGATCGGATCTTTAGCAAGATGGATAAGAACAACGACGACCAAATCACGCTGGACGAGTTCAAGGAAGCGGCGAAGAGCGACCCATCTATCGTACTGCTTTTGCAGTGTGACATGCAGAAGTGAGGGTATGCATGCCAGCATGCTCCGGACTGAGTatgttataatgttttattcatgttcAGCCAGTTCCACAAGattaacacaaaatatatttggaCTACTCAGATGAACTTGCTTCTTGTGGTTGAAAAACTAGTATGCATGGAATGTCAAATGCTAAGAGTTAagaatatacatttaatttcaaaCCTGCAACAACGTAAGGTGTGCAAAATAAGTCAGAATTGTTTTCATTCTTCCATCTATTGTTAGTCAGTGAAGTGCTCCACAGTAGGCTATTTCATTTATAGCTACGATACTTAAAGTTCATATTTACCACTATAGCTGCTGTATTTCGTACGGTGGTTCAGGTATTAAAAGCAAAATGTCACACTAAATGTAACGGTTTCTATTAAAACAGTATGTTTCAACTTTGATCTTAAACAGCAAGGAGGGTAGAGGGGTTCATTTAGCCTACCTCCCAAAATGTGCTTGTACTTGATTATAAATGTAAGTTATTTGCATGCATGTCCTAAGTGTAAAGCCTAATCGCTCCTATCTCTTCTTTTGGCAACCTTGGCAAATAATATAAGGAGGCCTTATAAACGATAACAGTAACTACTAAATACTAATGATGTGTGAGATTTACATTTGTGATTCACCCGCCCATTAGATATCTTTCCTTGGGTGCATGTTCTCtcccaaaaaagaaaacaaaaaaggaataaaaaactTACAGTGTGTATTTGTAGAAGCTATCTGTAAGGGACAACAATATGTCGTGGATCTCGTCTCTGGACAAATTTAGCCTTTATTTATTCTCTGCAGTGACAAAGGTAAGAACACCTGGGTCATTGATTTGTTTAGGACTGTTGCAGTTGTAAGCCGAGAAGTCAGACTGGATCACAGGTTTTTCCCAACAAATTACACACTGCCAAACCACTCActccctttttaaaattatttacgTATGAATCATATCACAGCGTGCATGTATGGATGCTTGTAGATTTGGTTAACTCGATTCATTCTGAAAAGGCAATTTATCATGTCCTTGCTTTCCTCGGAGGGCTTTAATAACACCCCTCCACCTCGTAATCAAGAAGCAATCCGCTACAAATGTGTTTGGTATACAACCTCAGTCTAAATGTGATAAGTTTTTATTgaactgttttttgtaaaatcttTCTACACGAGTCCGTGACATTTAAATAACCACTGtttatacagtaatttaatGCATCTTTAATGGCAAATGATGGGGTTTTGGAAGAGCTTTGAGCCACAACTTATTTTAACCACTTGAAGCAAACATGTTGTTACTCACGACATACACTCTTAATAAAGAGCAGGGGGATCCTGGTTAGAGGATTCCATCTCGAAGAACGTGTGCATCCAATCAGGATTTAGAGAACTCTTCAGTAATGGGTATAACTATTCCATCAATTACACATATATGGGATGAATCTATCTTTTTTAAAGGAGGGTTCTCCAACAAGGACAAACTAAAGAACCCCAAAACAGagttctttttgtttgttttattattaagagtgtATAATATAAAGAGATATTCTCTTCATTTTGTGTTCACCCAATTAGAAAAATGCCCTAAATTCTTGTTCTCCACATAAAAACTAATGCATCAAGCCCATGCAAGTTCGATAAGGCTCAGGATGCtgcactttcttttttctccaaaGCCCTCCTTGTAGAAAGTTATCATGTGTTTGTAAAATCCCAAAAACTGCAGATGTATATCTTTGCCATGTAAATATTTGTACCTAACATGGAAATGAAATACCAAATTTAAAGAACAAGTCATTTGATTGTGTAATatgatgtttgtgttttatttgtggCATGTCTTCAACTCAGTATGTAACGTTGCACTGACAACATTGTGATTCAAATCAATAAACTGTCTATGGGCTGTTTTCAGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112004 lncRNA upstream 1035 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 6808 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 8492 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 23753 24619695 ~ 24619937 (+) True G83116
XR_002650358.1 lncRNA upstream 67139 24572328 ~ 24576551 (+) True LOC111193227
TU112060 lncRNA downstream 115790 24771882 ~ 24772793 (+) True G83167
TU112074 lncRNA downstream 182438 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 237151 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 262333 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 275827 24931919 ~ 24932539 (+) True G83307
XM_022673002.1 mRNA upstream 53239 24576890 ~ 24590451 (+) True LOC103025610
XM_007251978.3 mRNA upstream 82991 24551942 ~ 24560699 (+) True LOC103024245
XM_007251974.3 mRNA upstream 92206 24460588 ~ 24551484 (+) False LOC103022677
XM_022673008.1 mRNA downstream 14530 24670622 ~ 24673463 (+) True LOC111188244
XM_022673007.1 mRNA downstream 17348 24673440 ~ 24679240 (+) True LOC103027511
XM_007287815.3 mRNA downstream 26094 24682186 ~ 24685860 (+) True ankrd66
XM_007251994.3 mRNA downstream 70126 24726218 ~ 24730018 (+) True LOC103029186
XM_007251997.3 mRNA downstream 76085 24732177 ~ 24736377 (+) True tp53i3
trnal-uaa_4 other upstream 333195 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 334800 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 336257 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 336997 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 501458 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 171582 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 278981 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 373945 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1263465 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1579406 26235498 ~ 26249096 (+) False G83602

Expression Profile