RNA id: XM_007251995.3


Basic Information

Item Value
RNA id XM_007251995.3
length 3006
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC103029498
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24715124 ~ 24726398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgtgatttattgggCAGAGCTGCAGGTCACTGCGCTCGTGTGAACCACGGTAAACATGTAGAGAAACAGAGCCGGGGGTCTGTCAGAATGACGGTCGCGATAAAGAACAGTGAATCAGACCATCAGGCTGAGCGTGTGGATTGTGAAGCTGCAGCATGGTGGAgcttttctctcctcctctcagTTTGTTTTGGTTCGGGTCGGACGGGGACGCGCTGCAGCGCTGTAAAATGCTGGATGTGGATTACCAGATAAAACACATGTGAACAAGGAAGTGCTGGGTGTAGATGTCACGCTGTGTGTAGTAGCCAGTTGCAAAGTTGCAGGTCCTTATTAGTCCAGAAGGATGACTGCAATGAAATCCATTGTTCTGTGAGAACCTGTTGGTTCAGCTTGTAACGAACTAACACTCCTGTCGACAGGTATGGATGTCCCTGGACAGAAGTACTTCACTACTATTGACTTTGTACTGTTTGCCCTCCTTCTTGTGGCCTCCATGGCCATAGGGCTCTACTATGCCCTCTCTGGAGGACGGCAGAGAACCACTCAAGAATTCCTGTTGGCTGACCGGAGCATGAAGTGCCTGCCCCTTTCACTGTCTCTCATGGCCACTTTCCAGTCAGCTGTCGCTATAGTCGGCACACCAGCTGAAGTGTACACCAATGGCACGCAGTACTGGTTCATAGGCTGCTCCTACATTCTGGGACTCCTCATACCTGCCCACATTTTCATTCCAGTATTTTACAGACTGAATCTCACAAGTGCTTACCAGTATCTGGAACTACGTTTTTGTAAAACGGTTCGTATCTGTGGAacagttacatttatttttcaaatgGTCATTTACATGGGTGTTGGTGTATATACCCCTGCCCTTGCACTACATgcagTAACTGGTTTTCACTTATGGGGAGCAGTGTTAGCAACTGGACTAGTGTAAGTGTACACAGCCCTGGGTGGATTGAAGGCAGTGATCTGGACAGATGTGTTTCAGACAGTGGTGATGTTCACAGGCCAGATGGCTGTCATCATAGTGGGTGTGCACCAAGTGGGTggtttttcagatttttggaGGAAAGTCACAGACGGAGGCCGCATCTCAGGCATTGACCTAAATCCAGACCCAACAGTGAGGCACACCTTTTGGACATTGGCGGTTGGTGGAGTGTTTCTGATGCTGTCTTTGTATGGAGTGAACCAGGCACAGGTGCAGAGATACCTCAGCTCTCGGACTGAGAAAGAGGCTATAATGTCATGCTACATGGCATTTCCTTGTCTTCAGATTGCGTTGGGTCTAAGCTGCCTAATGGGCCTTGTTATGTTTGCATGTTATGGTGATATCAACCTTGTAGACCAACAGTACATCAAATCTAAAGACCAGATGGTCCTGTACTTTGTCATGGATATGCTGCAGGACTTCCCTGGACTGCCTGGATTGTTTGTTGCTTGCTTATTCAGTGCATCTTTAAGCACAATATCTTCAGCTTTCAATTCCTTGGCCACAGTAACAATGGAGGACCTGATCAAGCCAAATTATCCTTCTATAACAGATTCTAGAGCCACCTTACTGTCCAAGATACTTGCTTTTTCATATGGACTTGTCTGTCTTGCTATGGCCTACATTGTCCATTTGATGAACAGTTCTGTTTTGCAGGCAGCACTCAGTATCTTCGGTATGCTAGGAGGACCCTTGCTGGGTCTCTTCTGTCTTGGGATATTTTTCCCTTGGGCCAACAGCTCTggtGCTGTGACGGGCCTGATTGCTGGTCTGGTCATGGCGTTCTGGGTTGGCATTGGTGGATTTGTGGCTCAGATGTCAAGCAGTGTCACTGTTTGTCCCCATAACTGCACTGATACAGTAGCAACAAAAAATCTTACCATGGCTACAGTGACCGCTATCATGACTCCAGTCACCAATAAACCAAgtaaacctGTTGCCCATCATGGCCTCTATTCACTTTCATACATGTGGTACAGTGCTTTCAACTCTTCTGTTGTGGTTCTTATTGGGCTTTTTGTCAGTCTCATCACAGGGccaatgaaagaaagagacgTAACAACAGGCACAGTGTATCCTCTTATGGATAAGATACATTCTTTACTGCAAATTCTAGTAAAACCCAAGGCTTGTATGGGCTCATCTCCAGAACACAGGgAAACTGATACAACACATCAGCAAATAAATGGCATTTCCCATACAGAAAACAATACTGGAATGGCGGACGAAAGAGAGACTTTTTTACCATCAGACCAAACATCTTATTTGGAGCAGGAAACATCTGTATGATGcaccatttttaaagtatataagGTGTATGTATGGGTATTATGATTATGGAAGCATAATAGCAATTCAGCAGTATTACAGTATGGTATTAAATTGCTTTGTTTAGAAAAAtgatgtttctttttatttttatacagtttatacagtgAAACAAATGGTTTGTGTGATAACCATAGCAAAATAATTTTAGTACTGTACCATGTCAGTGTTGACACTGTAACTTGACACTGTAATTTCAGTATTTACTAAGCTTGCAGATTTGAATACCACAATAAGACGTCATTAATGACAGATACAAGGTGTGCCTATCTTACAGTCCTAGCCAAAGGTAAGGAACAGATAAGTCATAGCTGCCAGTTATGCTTTATATTTGAGTACTTGCACTGactttgtaaaagaaaaatataaggCAAAATAATCACTGGAAATAATCATTTGAGGTAAAATGAATTCAATTTTGTGTGGAAGAAAAGCGCATTCTCATAAAACTACTAgttatatagtaataatatagtatagtataaaagGTACTGTTGGGTTAATATTTTCTGTGCATGTTATATCTGCATTAAGCTTTTAAAACACTGGCACAAATTTCTGGAGTCAGTATACATGAGTctttcaaaaattaaaaaaaatatatataccagGTGCTCTTCCATATGAAACACTGAGATAagatgaaataaaagaaatctacTGAACAGcactaaattt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K11928 putP; sodium/proline symporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112129 lncRNA downstream 122435 24588941 ~ 24592689 (-) False cunh6orf183
TU111902 lncRNA downstream 440034 24271440 ~ 24275090 (-) True G83059
TU111817 lncRNA downstream 698822 24012951 ~ 24016302 (-) False G82991
TU111788 lncRNA downstream 708298 23939918 ~ 24006826 (-) True G82971
TU111735 lncRNA downstream 954197 23713953 ~ 23760927 (-) False kiaa0586
TU112175 lncRNA upstream 10306 24736704 ~ 24740999 (-) True G83254
TU112174 lncRNA upstream 11251 24737649 ~ 24740999 (-) False G83254
TU112153 lncRNA upstream 37498 24763896 ~ 24764321 (-) True G83236
TU112183 lncRNA upstream 39537 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA upstream 39537 24765935 ~ 24769310 (-) False G83259
XM_022672483.1 mRNA downstream 2699 24699912 ~ 24712425 (-) True LOC103028045
XM_015606493.2 mRNA downstream 16161 24684330 ~ 24698963 (-) True LOC103028568
XM_022673006.1 mRNA downstream 45146 24654721 ~ 24669978 (-) False LOC103026721
XM_022673005.1 mRNA downstream 45146 24654721 ~ 24669978 (-) False LOC103026721
XM_007251987.3 mRNA downstream 46582 24654721 ~ 24668542 (-) True LOC103026721
XM_007252000.3 mRNA upstream 21656 24748054 ~ 24758220 (-) True LOC103030890
XM_022673013.1 mRNA upstream 32984 24759382 ~ 24762749 (-) False LOC103031209
XM_022673012.1 mRNA upstream 32984 24759382 ~ 24762745 (-) False LOC103031209
XM_022673011.1 mRNA upstream 32984 24759382 ~ 24762745 (-) False LOC103031209
XM_022673014.1 mRNA upstream 32984 24759382 ~ 24762590 (-) True LOC103031209
XR_002650359.1 other downstream 79243 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 697468 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2090415 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2636263 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 310837 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1266101 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1708074 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3108384 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3618191 28344589 ~ 28356545 (-) True G84215

Expression Profile