RNA id: XM_007252000.3


Basic Information

Item Value
RNA id XM_007252000.3
length 2535
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC103030890
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24748054 ~ 24758220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atctgCTGTATTATCCACCCACACTACTAGTGATGCAGCAGGgtgtgtaataatgtatatTAGGTAGGAGAACCGCTAGGTGGGAGCAGCGCTGCATGTAAGTGGCTTTTTTTTAGGCTCTGAGTAAAGTCAGGGCTTTTCCACGCCTCCTGCGTTACCGACACGTCCCCGGGTTTCAGCAGAAGACTGAGGATGTCTTGAATGGCTTTGTTTTGCTCTGACGGTATTGGTGAATCTTCAGCTTGCATACAAAGCAAGATCTCCAAGGATGACACTGGAGGTGCTATTGGCTAGACGGGGCAGCAGCTGTGATTAAATCATCCTGATAATGAAGTTAGTTTAGTTACTCTACCTCTACAAAAGCTCATCAGTGTTAGCATCAGAAAAGTCTCAACAAGGGTTCAGACGCCTGTGGGAGggccAGGCCTGCAAAGGGAAAATCATGGCAGCTGATCTCTTACTCATGAGAAGACTCACCAGCCTCAGACAAGTGCCTTACCAAAGTGTTCAGATGAGATCCAGCGTGGGTCTCAGAGAGAGCTATCTAAAAGATCAGAAGTACAGAGATGATTCAGGTGTCTGTGTTTTGGATTCTCCCCATAATTACTCTCACGTCAGCAAAGGATTGAGCAATGCTGAACGTGCCAAGACTCTCAACCGGTTGAAGGATAGTGCAAAGGGCAGTGATGCGGTCAACATTTATAGCCATAAATGTTTGGGAAAATCCAGATACAAGTTGTTTGGAGGGCATACTCAGTCACGAATGCTGGTCTACGCACAAACCTGTTTGTTCCATCAAGATCACTCTCACTTCAGTGAtgtgaaaaaagaaagggaCGAGGCAAGCAAAGGTGCCAGAAGAATTGaccccaaaaaacacacacaaatgCTCAGTGAAAGTGCCAGGGAGCGCAAAGTACCAGTTACAAGATTGGGACGCTTGGTAAATTTTGGAGGCTTGGCAGTGGGACTCGGCTTTGGAGCAATTGCTGAAGTGGCAAAAAAGAGCTTTAGATCTGAAGAGAAAAAAGGTCAAAAGAAAGCTATCCTTGACTCCAACCCATTTGTCTCTGAGGCCAATGCTGAAAGAGTTGTTCGCACTCTGTGCAAAGTGCGAGGAGCTGCTCTTAAACTTGGGCAGATGCTGAGCATTCAAGaTGACGCTTTCATCAATCCTCAGCTTGCAAAGATCTTTGAGCGTGTTCGACAAAGCGCTGACTTCATGCCCACCAAACAAATGATGAAAGTAATCAGCAGTGACCTGGGCCCAAACTGGCGAGATAGACTGGAGTTCTTCGAGGAGAAGCCCTTTGCTGCTGCCTCCATTGGTCAGGTGCACCTGGCTAGGATGAAGGATGGTAGAGAAGTAGCTATGAAGATCCAGTACCCTGGTGTAGCCAAAAGTATCAGCAGTGACGTCAAGAACTTAATCACTGTCCTGAGCATGAGCAATGCATTACCTGAAGGACTGTTTCCAGAGCACCTGATCGAGGTTATGAGCAGGGAACTGGCTCTAGAATGTGATTATGTGAGGGAAGCTGAATGTGGCAAAAAATTCCAAGAATTATTAAAGGATCACCCATACTTCTATGTGCCAAGTGTGATAGATGAACTAAGCAACCAGCATGTCCTCACCACAGAGCTGGTGTACGGTTTCCCTCTGGATAAAGTTGATGAATTTCCACAGGAGCTCAAGAATGAGATCTGTGAGCAGATCTTGATTCTTTGCTTGAGAGAGCTCTTTGAGTTTCGATATATGCAGACGGATCCAAACTGGTCCAATTTTTTCTTTGACCCTCAAATACACAagGTTGCACTGTTGGATTTCGGAGCGACTAGAGGTTTTGATGCATGCTTTACAGATACATACATTGAGataatCAAGGCTGCAGCAGACAAAAACCGAGAGGGAGTTTTGCAGCAGTCAATTGAGATGAAATTTTTGACTGGTTACGAGTCAAAGGCCATGATGAATGCCCATGTGGATGCAGTCATGATCCTTGGCGAGGCCTTTGCCTCAGAAGAGCCCTTTGACTTTGGCACTCAGAGTACAACAGAGCGGATCCACAGCCTCATTCCCGTCATGCTGAAGCAGCGTCTCACCCCTCCCCCGGAAGAGACCTACTCCTTGCACCGCAAGATGGGAGGCTCCTTCCTGATCTGCTCCCGACTCAAAGCTAAGCTGTGCTGTAAGAACATGTTTCAGGAGGCCTATGATAAATACTGGAGAGATCACAGAAAAGCCAAAGAGTGAAGAATAATGGGAGAGGTGAACTGCTATTGAGAGTGCACTTTATCTTACTTATACCCTTAAACCTAACCTGATATAAAAGATTGTGCCCAAAagatttctacatttatatgaCTGCGAGTATGGATAGATGTGTTGTGAATAGAGGAAGCTTGTATGTAATGGTGTAACATGTTGCTGATGATGCAGTCTGGATTATACTACACATGACAATATTGTGCAACTTAAGCCAGTTACTGTATTCTGAATATTTAATGAACTGAAGTAAAAGATTATGAACTTGA

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08869 ADCK, ABC1; aarF domain-containing kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112175 lncRNA downstream 7055 24736704 ~ 24740999 (-) True G83254
TU112174 lncRNA downstream 7055 24737649 ~ 24740999 (-) False G83254
TU112129 lncRNA downstream 155365 24588941 ~ 24592689 (-) False cunh6orf183
TU111902 lncRNA downstream 472964 24271440 ~ 24275090 (-) True G83059
TU111817 lncRNA downstream 731752 24012951 ~ 24016302 (-) False G82991
TU112153 lncRNA upstream 5676 24763896 ~ 24764321 (-) True G83236
TU112183 lncRNA upstream 7715 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA upstream 7715 24765935 ~ 24769310 (-) False G83259
TU112188 lncRNA upstream 13662 24771882 ~ 24772742 (-) True G83260
TU112202 lncRNA upstream 43107 24801327 ~ 24857856 (-) True G83271
XM_007251995.3 mRNA downstream 21656 24715124 ~ 24726398 (-) True LOC103029498
XM_022672483.1 mRNA downstream 35629 24699912 ~ 24712425 (-) True LOC103028045
XM_015606493.2 mRNA downstream 49091 24684330 ~ 24698963 (-) True LOC103028568
XM_022673006.1 mRNA downstream 78076 24654721 ~ 24669978 (-) False LOC103026721
XM_022673013.1 mRNA upstream 1162 24759382 ~ 24762749 (-) False LOC103031209
XM_022673012.1 mRNA upstream 1162 24759382 ~ 24762745 (-) False LOC103031209
XM_022673011.1 mRNA upstream 1162 24759382 ~ 24762745 (-) False LOC103031209
XM_022673014.1 mRNA upstream 1162 24759382 ~ 24762590 (-) True LOC103031209
XM_007252004.3 mRNA upstream 1162 24759382 ~ 24762589 (-) False LOC103031209
XR_002650359.1 other downstream 112173 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 730398 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2123345 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2669193 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 279015 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1234279 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1676252 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3076562 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3586369 28344589 ~ 28356545 (-) True G84215

Expression Profile