RNA id: XM_022673013.1


Basic Information

Item Value
RNA id XM_022673013.1
length 1726
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC103031209
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24759382 ~ 24762749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGTATACACATGATGCTAGTTGTGCATGTGTTGATAATAGTGATCAATAGCTGAATGTGGGAGATGTGCTTCAAAAAACGGACTGTAGGCGGAGTGATCTCTACATCATACGAAAGCGGGTCGGGGAATGATTTGTAGATCAGCGAAGCTGCGCAGATTTGCGCACCATGTGCTTTGTGTCATATCCGGGGGAGAAAACTCTGCTCTAATAGCTGCTAGCTGCCAGTTTAAGGACATCGATGATGTTATTGCTCAGGCAAAAAAgtcaggAGTTCTGGCTCTTCTTGCGGTGGCAGAACACGCTGATGAGTTTGAGAAAATCATTCAGCTGTCACACAGgtTTCCTGGTTTTGTGATGCCTTGCCTTGGAGTTCACCCTGTTCAAGGCCAAGACCCAGACCACCCCAGAGGGGCGTTACTAGAGGATCTAGATTCAGCCTTACCATTAATTGAAAAATTTAAAGAGCACATTGTGGCTATTGGTGAGGTTGGCCTTGACTTCACACCTCGGGTGGTTAACAGTGATGCAGGGAAAGAAAGCCAGAGACAAGTGCTCATTCGTCAAGCAGAGATCGCAAAGCAGCTAAATCTACCTCTGAATGTTCACTCCAGATCTGCTGGAAGACCTACCATTCATCTTTTAAAGGAACTAGGTGTAGAAAATGTCCTTCTTCATGCTTTTGATGGAAAACCCTCAGTTGCAATGGAGGGTGTCCGTGcaggatattttttttctataccgCCATCAATTGTAAGAAGTGAACAGAAACTGGTGAAACAGTTGCCGCTGGAGAATATGTGTCTGGAGACAGATTCACCAGCTcttggaccagagaaacagGTGAGAAATGAGCCGAAGAATATCGCTGTCAGTGCAGAGTACATTGCTAAAACCAAAGGAATTCCGTTGGAAAAGGTCATGGAAATCACTACACAAAATGCCCTTCGTCTCTTCCCAAAGTTGAAGACATTAATCAAAATGTGTCCTTGATAcaataacaaaaacagtacagtctGCAAAACATCTTGTATTTAAACAGTGTAAACCACATGGGGCTATATTGGAAATTTCAAGCTTTATATATGGATTAATTTTACTGTATGGAGCTTCACCTTACAGCAGGACAGTGACTTGAACTGCCTGACTGAAGCAACTGTGGAGATTTCAGGACAGAACATTGAATGTGCTGGAGAGAATTATTGAACTGAAATCATTCAGCATCTAGCAATATTTACGGATCAATTGACTTAGGTTTGTCTAAATTCTCTTGGTCTCCTCAAATAGGAAGTGTGTTTGCACTGGATGGTTGCTTCCTGTATGGTACACATATTAAACATTTCCTCATATTAAATCAGGCATTGCAGATTTTAGCATTATTATAATCACTCATCAAACCTAATGTGCTGAAGGGGAAGAAATCATGTACAATGTTCACATTTATGATCTGACAGCATCGATTTAGTtgcagttttccagacagggactaagcctagtcctggactacacATCCCAATTCAATTGAGAATTTCCATTCATATTGCTGTATGGTCAATGAACAGGCTTAAGCCTTGTTCAGGAAACCAACACCACTAGCTTCAGAAGAACACAAATATTAAAAGTGGATGTGGCTTCAATAGAATTTCTCCAAgtatgtatgtgtttctctctgtaaataaaccagacTACATcatttaaagataaaataaagccTCGTGAATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112175 lncRNA downstream 18383 24736704 ~ 24740999 (-) True G83254
TU112174 lncRNA downstream 18383 24737649 ~ 24740999 (-) False G83254
TU112129 lncRNA downstream 166693 24588941 ~ 24592689 (-) False cunh6orf183
TU111902 lncRNA downstream 484292 24271440 ~ 24275090 (-) True G83059
TU111817 lncRNA downstream 743080 24012951 ~ 24016302 (-) False G82991
TU112153 lncRNA upstream 1147 24763896 ~ 24764321 (-) True G83236
TU112183 lncRNA upstream 3186 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA upstream 3186 24765935 ~ 24769310 (-) False G83259
TU112188 lncRNA upstream 9133 24771882 ~ 24772742 (-) True G83260
TU112202 lncRNA upstream 38578 24801327 ~ 24857856 (-) True G83271
XM_007252000.3 mRNA downstream 1162 24748054 ~ 24758220 (-) True LOC103030890
XM_007251995.3 mRNA downstream 32984 24715124 ~ 24726398 (-) True LOC103029498
XM_022672483.1 mRNA downstream 46957 24699912 ~ 24712425 (-) True LOC103028045
XM_015606493.2 mRNA downstream 60419 24684330 ~ 24698963 (-) True LOC103028568
XM_022673005.1 mRNA downstream 89404 24654721 ~ 24669978 (-) False LOC103026721
XM_007252010.3 mRNA upstream 32000 24794749 ~ 24797199 (-) False LOC103033209
XM_022673017.1 mRNA upstream 32000 24794749 ~ 24796831 (-) True LOC103033209
XM_015606496.2 mRNA upstream 63416 24826165 ~ 24828725 (-) False LOC103035756
XM_007252019.3 mRNA upstream 63416 24826165 ~ 24828723 (-) False LOC103035756
XM_022673021.1 mRNA upstream 63416 24826165 ~ 24827717 (-) False LOC103035756
XR_002650359.1 other downstream 123501 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 741726 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2134673 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2680521 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 274486 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1229750 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1671723 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3072033 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3581840 28344589 ~ 28356545 (-) True G84215

Expression Profile