RNA id: XM_007252008.3


Basic Information

Item Value
RNA id XM_007252008.3
length 8611
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103032669
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24772806 ~ 24793331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcagtgttgCTGAAGTTTTTATGCACcttagtgtcactgctggactgagaatagtccaccaataGGAAATACCCAGACAACAGAGGTCTGCCCACAGTGCCTACAGTGTTCCATGATCATCTAGAGGATGATCAACACTgtctgtgcagcaacagattacagagcttctgtctctgagttTACATATACAAGGTAGTGGACTagaagtgtctaatagagtagACTTGAGTTTTGAGATTTACTGTTGAAGAagaaacagggtgaaaggagaataataaagtatgcagtgAAATAGAAGGACTACAGTATTTGATTACAGAACTACCAGTGACTCCTAGATGCTCGGAGGAGCTGAGAAAATGGATAATGGATGTAGTACCATCAGGTGGTCATTATATTCTGATATGACTGTGTAAATTGTGGGCTGTATGCCATGTTCATCTAGTGCAGTTATAGCAGTCTAAAAAGAGAGGCTGTATATGTGGCAGACGTAACCCATAGTTACAGACACTTCAGCACTCACCAGCCACTCCACAGCATAGATGCAGCTGTGATATTCTAAACTAATGTCCTTGCTTTCCCATAGCTGTATTCATCTTTTCTCATAGCTGTATTCATCTTTCATCTCGCATTCCCCTTGGCCTTCCCTCCCTTCCTCTGTGACGGGATTGTGCAGCTCCAGAGCAAGCCGAAGTCTATTTCTGTCCCTGTATATTCTCCTCTGGCTGCTGCCAGCAAGCATAGCGTTGTCACAGTGATAGACATCTCCACCAGCCTCCCTCAGCCAATCAACACACCAGGTGTTTATGCCAAGAAACATGATCATTTTCCATTTCCTTCCCACTCCTCTTGTATGAGAGTAAGGGATTAGTAGCAGAGCCCAGTGAGGAGCACACTGAAAAATAGAACCCTTGGCAGTGGCACTCTGATGATGGGAAATGCAGTGTTCAGCCTTGGAGGAGGGAACTGAACTGAGTGGATCTATCAAGTTCCAATGGAGCATCTTGTGATATtattaaatctgaaaaaaaaaaatgacagaggTGATTTctacagatgatccagaacaACTAACTGATATGGCCTTGATATCAACTTGGAGCTGTTATGCAGGCCTCATTGCTCAGTGAACTAAAGGCTGTTTATGTTTATGAACATTTTCTGACATGATTATGTTGGAACGGAAACTCTCCACTACATCAAACTGAATACTACATCTATTCAAAGGAACCTTAGGAATCTGATGCTTTATATGACAAGATGGAGTAGCAAAAATGTAGCAAACGTAAATCCTGGTCATAAACACATAATAACATTTGCGTCATGGATACTTCTGAACCTTCTGTTGGTGCGAGATGTTCCCAACAAGGAGCTTCAGGAGAAGAGACTAAGTCTAATCCTAAAATGACCCAAAAAGGCCATATTTCTGACACTGAAGGTGAAGTAGGACTAACAGAGAAACCCCAGGCAGGAGAGTTAAGGCCATGTTCTAGTTCAGAGATAAAGACGGTGGGGTCTGAAGCTTGTCCCACGTTACAACCCAGTGAGCAATATCCAATCCACAGCTGGAGTAAGACGCACATTATCCCTCCTCCTGGAAAACGAGGGATTCAATTAAAGGTTGACTTGCTGTCAGAGGGTCTGCacaaaaaagagcagaaaccaAAGAAGACAGGAAAGTATGTTTGCCATTATTGCGGGAGAGCTTGTGCCAAACCCAGTGTCCTAAAGAAGCACATTCGTTCTCACACCGGTGAGCGACCTTATCCTTGCGTTCCGTGTGGATTCTCctttaaaactaaaagtaaTTTGTACAAACACAGAAAGTCTCACACACATGCTGTCAAAGCAGGTCTGATTCCATTTTCAGAACACGACAGTAAGCGTTTGGCTATGGATGAAGAATTAGGAATTGGAGAAGGGGAGATGCAGTCTGATGCTGAGCAGAGCACTGACACGGATGAGGAGCTGATAGAAGAAACTTCCATCCATGTGAAAGGCAGAGAGGACATTGCACTGGAAGAATCTGGTAAACTCATGCAAAACAAGCCTATGATAAGCTTTTCTGAGAGCTCTTTGAAAAAGGACACACTGTCACCTTCAGGAAAAATATCTTTATGGCAGTTCAGAGAAATGATGCCACCTGCAGTTGTCACTCAGGTGGACCAAGAGATTGAGACCTCCACCATCAAGCAAAGACTTGCACTTAGGCTTTCAGAGAAAAAGAGCCAGGAATCAGACCAGTCTCTCTCCCTTCCCAGTTCGTACAGCAAAGGCAGCACCGACTCTGGTTATTTTTCACGCTCAGAGAGTGCAGAACAGCAGGTCAATCAACCAAGTGCAAGTGCCAAGTCATACCAAGAAATTATGTTTGGGAAGTGTTATAGACCGAGCTCCAAGCCAAGGCAATCAATCACTGTACAGACCTGTATGACAGACATAAATGAGACTTCATCGAGTTTCATGATTAAATTGACCAAAGGCATGCTGCCCGGGGAAGCTACATCCCATTTGCACAGGCGTAAAAAGGACCTGGTCAGATCAATCAAAATCGAATCAGATTCTTTTCAAGTAGAAGACTATCAAGAGGTCCCTGAAATGTTTCAGGGTAGTACTGAACTTCTGGAAACCCCACCAGAAAGTGGTTTACTTTTACGAAGCAACTCCCTTCCAACCCCAACTGATTCCACCTTGAATGCACCACAAGCACTACGAAGTAGTAATTCTTTTGATGAAAGGATGACAAACGATGACGCTGCCTATCGTGGCTCAGTAGGCATGAGAAAGCTTATGAGACAGGCTGCTTTCGAGCACTCTGCACATGAAGGGCACACAGAGTCAGATAGTCATGCTTCAGTGGTGTGTGGCCTGAAATCAGAGGTGAAAATTCACAGAGTTGAAGACTCTAAATTTGGAATCGAGAGTTGTCCAGAATTTGAGCGATCACTTATATTTCAAGGCCATATGGTGGAAAATGCCACAAGGAAACGTAGAAAAGGAAAGAATGTCATGGAAGACGAAGATTTCCTGACCCAAAATAAGCCATCaggactgcctgaagtctcagGAGACCttgatacaaaacaaaacatacaagAGGCAACATATACTGATACAGACAGAAGGGCTGGCAGCAATGTTATCTCTGTAATTCAGCACACAAACTCATTAAGCAGACTAAGCTCTGCAGAGAAGCTCATTGACTTTGAGTCTCTTCAGTTCGATAAAAGTACTGTTTACCATATACCAGAAAAGGAACTAATCAAGGAAAGACACAAAACAGATCTCCTCATTAAATCCagtaaaattgaaaaacagTGGGGTGGCAGTAATGTACTATACCAGAGGTCATACCCATCCAGACAACTTGCATCTCAGTCAGGAATCCAGGTCCCTGAGATAAGAGTTACTGAAGAGCCAGACAAACCAGAGAAGCTACAAGATGTTCAGGTGAGGCCAAAGGAAAAACATGGTGAGGAATTCCAGTGGCCTCAGAGGAGTGAAACCTTGTCAAAATTCCCAGTTGAAAAGCTACCTCCAAAAAAGAAGCGCTTACGATTAGCTGAAATGGAATGTTCCTCTGGTGAATCCAGCTTTGAATCTGCTTGTACTAGTCTCTCTAGAAGCCCAAGTCAAGACAGTAATTTATCTCACAGCTCAAGTTTCTCTCAATCACTTGACAGAGAAGACAGTGTTAATGTTGCATCCCCAGCTAAATCGGAAGAACTGAGTAAGCCTCTTGAGTTCCTTGCAGTGCCAGGGGGCTCACTTAGTCATCATAGAGAGATGAGGCGCTCTGCATCAGAACAGGCACCCTGCAATGTACCCCTGGAGTTACCAGAATTTAGAAGCAAGTCCTTTGACTATGGCTACCTTTCTTCTTCAACCAGTTCTATGCAAAGTGACATTTATGCCAGTGCAAGTGGATATCAGGAGCGACGAAGGGGCTACTTGGTCAGACAGGCCTCTTTGACTGGGGATCCAGAAACTGTCACACATGACAGATCTTTGGAGCACAATCTTGCTCATGGTGGCTCAGATACAGTTGAAATAAGCAAAAGAGTATCTTCACCTGATGTACAGTTTTTCTTAGAAGGATCCTCTTTTGGCATTGAGAAGATGAAACAGTCTTTGATGTTTGGAGGTGTCTCTACACAGCAGCTAAATACAGCACAAATCCCACCAGTGCAAATCTCATGCCAGAAACAAATTTTTCATCCTCAGACTTTCATCCGCAGTCTAAAgcagaaaacagagaaagatcCTGAAGATTTAAATCCAACTGAGGAGCACAGAATTGCCCTGATGGATCTACCAAAAGATCAGCCACCCAGTGTCTCAAATGTTTTGTCAACAATAGCAGTTCTTTCTCAAGCTAAGCCTGCTTTAGCCAGTCAGAGATTTTGCAGTTTGTTGGTTCCTGTCAGAATTCAGATGCAAGTGCCGTGCTATGGAAATATGACATACACAAGTATATCTCACATTCTGGATTCTATGAATACCCCAAACATAGGAAACAGATACGTCACAAGTCCACCTGTAGGTATCACAGCTCAGAATAGAGTAACTTCTGATCTTTCACAACAATCAGGACAATCCAGAGGACTGCTGAACAACCCACCGTTATCACCTGCAAAGCTTAATACAGGCATACCTCTTTCCTTGACCTCCAGAACCATCTCAACCACAGAGGCTCCCAGTGTTGGAGCTCACAAGCGTATGCTTTCTCCTGCAAGTAGCATTGAGCTCTTCATTGAAGCAAAGCAACAAAAACGTGTCAAAGATGAGAAAATGTATGGCCAGATTGTAGAAGAACTGAGTGCTGTAGAATTAGGACATCCTGATGGTGGAAGAGAATCCAGAATAGAAAGAAATGTCCAGGAGAGTACATCTGACCTTCAGGACTCATCTATGACTGTGGAGGAGATAGACATAGACGACTCCAGTGCAGATCTTTGCCATAAGACAGAGTTGCCTTTGTCCAGCAATGTTTTACAAGAAGCAGTAAGCAATTTGCCAGTGCCAGTCAGGACCTCAACCAGTCAAAGTCATGCCGTAGCTGCACTGCCCAGAGATATTGCCCATGCTTGGATTCTGTCACAGTTTCCAAGTCTTCACACTACAACATGTGTGAGCTGGTGTTATCTCAATTCTACAAAACCAAACAGTGCTCAAACATCCACTCATTTCTCAGTGTATGCCACTTGGTTTGTAAGATCCCATAACCCAAATCCACCCACTCTTAGCACTGGAATGGTTCTTGCTCTTCTCCGGTCCAAACAGAGGAGCCAAAATGCCACATATACAATTGCAGCTATTAATCAGCCTGGAGTACTTGTTACCTCAGCTTTGTGGAATCAGAAGCTGGAGCTGggAATTGTGGACAAGCGAGGGGATGATATACAATATGACACTCCAatgaaaagtgttaaacaaaagaacaaatgTTTGCGTGAgaatagcaaagacactgaaACATCTGTGAAGCAAACAGAATCTGTTCGAATTAAGATATTTGAAGGAGGGTACAAATCAAATGAGGAATATGTATATGTTAGAGGCCGTGGACGAGGGAAATATATTTGTGAAGAGTGTGGTATTCGTTGTAAAAAGCCTAGCATGCTGAAGAAACATATCCGTACTCACACAGATGTAAGGCCTTATGTCTGCAAGTGCTGCAACTTTGCCTTTAAAACTAAAGGGAATCTCACCAAGCATATGAAGTCAAAAGCTCACATGAAAAAATGCCTGGAGCTTGGGGTTTCACCTATGGCAATGGACAATACAGATGATGCTGATCATGAAGATGATGTCCAGAAATCCTCAGATATCAGAGTGGCAGTTGGTACAACCATCAAACATCAGTTCTCGGACGCAGATGATTCTGACGGTGGAGATGAAGATGGAGAAGAACCGGACGATGAAGAGGATGATGAATATGATGGTGACTCTACACCAAGAACCCTCTCCAGGAGCACGAGCCCTCAGCCTTGCGCAGTAAACAATACGTTTCCCTCCAGCTGTTTCACTAGGAGCTCAGACTCAGGAAACACTCCTAGGGACAGGTTTGAGGCCTCCTCTCTCAGTAATGAGGATGATTTTTCTCTGGAGCAAGCAAGCAGCTCGTTTGATCCCTGCCCACCTCATCTGCTTTCTCCTTGTTGGGATTCACCTCATCAAAGGTACATGTGCCCAAGGGGGGATCTGTCACCACAAGGTCATCTGTCTCCAGGAAGGGACACATCCCCGTTGAGGGCCATCTCACCAAGGAGGGATTTAAATATCAGAGGAGATCTGTCACCTAATCGCCAGCTCTCGCCTGTGAGACCCATGTCACCGGGGACAGACGTGTCCAGGCATCGAGCACCCTCCCCACGAGGCCGGCACAGGGGCATGCTCAGGGCTGCTTCCCCACGCAGGGGGTCCTACCAGCACAGAGCCTACATGGATCAGGGCAGAGGCATGAGATTTGAAGCCTCTTCCTTAAGACAAACCATTGGACTGCACCCAGAAATGGATCAGCGAGAGAGCGGTTTTCAAAGCCTTTATGTCAGTGACTGCCTACGAGGTAAATATGATGCATCCACTCTTCCCCATCGGGACATCTTCAGCCACTTGCCTTTGCACTCCCAGTGGCAGGTTCCAACTCCCATCCCAATGGTTCCTGTTGGAGGGTTAAGAATGCCCTCTGTACCACCATGTGGTGCTTCTGTGGACAGACACTCTCAGTCACTACCAGAGGGAGACATATCAGAGGGATCTAATTCCAGCCAGACATCAGTCCCTGTTCCCGGACCTGGGACAAGCATCTCATCCCAAAAGATGGAGAAACCAACCTCTGCCACTGGTCTTGCCAGTAGGGACAAGAAGCAAGAGGAGAGTGTTCAGATCTGTGCACAGGCAATTGCCTCCCTCAGGATCACTTCAGAGGAAAATCCTCCAAAAAGCTGATTCAGACAGCTTTGGAAAATCTTTTATTATGTTAAGCGTGAACAAAGCTCAGAGGATGACTTAGAGAAGCTAAAGTTTTGATAAGGTGCAATAAATGGCAGAAACGAATGATGAGTATATGCACACAAATTTTTGCAAACAAATGCACAACACATATTAGGTCAGGCTGCCATATTAGTCTCAGATTTCCATTGAAGTCATTGTATCCATGTATGCATATATAGTAAGGCCATGCAAAACATACATATGCAGACCACAGATACAGAACTTGACAGCAGTATttcaaaaatgcatttaaattgcagaaactgcattttgtaaactatttctattttttcaacaactaaaaagtacctttactttccAAGTCGACAGCCGTAAACTTTAGTGATCATGACTATCATGGAAGTCACCCCATCTGATCGGCTTGTGCCTTTTTAGAATTATTTGCCTATGCCTCAGTGAGACAGAATTGTTGGATGTATTGTCAATGCAGTGAAATATAGTGTAAAGTAAAAGTGAGCAGAGGAACTGTCAATGCTTTTGAAATTGcacttaatttacattttaccgTTTGAATATTGCATTCAGCAGTGCTATGATATTGCTTAGTATAGTTGTACATGTTATGTTTGCTAGTATGTTAGTTACATATTTGTGTAATTGAGCTTTTTAATTTTGGAatgtgaaataatatatatttgtttttatttaaaaccttTAGCATTTCTTAAAGTTGTACACATTTCCCCTTGTTTAACCTTATATTGTTTAGCACTTATGCAACAAAGTGAAATCTGTAGATGTTGTTCATGTAGTTTATCTTATGACAACATATTATTGCTATGATAACCTAAAGTAATTAGTAAATGTTATGCATTTAGATTACTATTTAAAGCACTTTCTTAAGAAGTAACTGACTGATGCTGTGCAGTTGATATGTGGGCTATTTGGAGTCAATGTATGATTGATTTCAACAAATGGCACAACATTCCAGCCAATTGTAAGTCAATTATAtgcacataaatatacatacagtgtTGGATAGTCAcggattacatatttattagatGATGTATTCAGTTTATGAAAATGATGGATTATTTATCATTACTTATAACCTAGATCAGGGAGTCCCAAAGACAGTTCTTGGGACCTAATGCTCTGCACAGTTTGTCCCTACACTGAGGGAAAGCACATATGTGCACAGTGTGAGCTCCCCAAGACTGAGCTTGAGAACACTCTGGACTTGATTATGCATTCAGTCATGAAAACATACATGTTTCTTACATGTGATTTTATTATGGCCTAcctttttaaacatctcagcaTTTACTGAGATAACAATCAAGCATATGTTCATTAAtctaaatacagtatgtttacattttttgcacATAGTAAGTCACTGAAATCATACATACCAATGATGTAACTGACTTATGTACATTTAGTATTTTCACTGGCATTAAACATGTTTTGGTTAAATATTTTTGAGAATGCCTCCCAGTACAGAATTATACCTGTGTAATGAAACTAACAGTAATCCAGTAATGATCAGATTGCACTTTTTGATTAAGATTTTCCcgaattaatatttataatcagTGCCTGATTACATTTTCTAAGTAATCTGCCCaacaccactctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112060 lncRNA upstream 13 24771882 ~ 24772793 (+) True G83167
TU112004 lncRNA upstream 130151 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 135924 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 137608 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 152869 24619695 ~ 24619937 (+) True G83116
TU112074 lncRNA downstream 45199 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 99912 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 125094 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 138588 24931919 ~ 24932539 (+) True G83307
TU112322 lncRNA downstream 334629 25127960 ~ 25132154 (+) True G83354
XM_015606544.2 mRNA upstream 1753 24765981 ~ 24771053 (+) True fuca2
XM_022673010.1 mRNA upstream 25001 24742969 ~ 24747805 (+) True LOC103045971
XM_007251998.3 mRNA upstream 30009 24737013 ~ 24742797 (+) True LOC103030357
XM_007251999.3 mRNA upstream 30009 24737020 ~ 24742797 (+) False LOC103030357
XM_007251997.3 mRNA upstream 36429 24732177 ~ 24736377 (+) True tp53i3
XM_007252013.3 mRNA downstream 5701 24799032 ~ 24805385 (+) True LOC103034484
XM_007252014.3 mRNA downstream 5714 24799045 ~ 24805385 (+) False LOC103034484
XM_007252011.3 mRNA downstream 14595 24807926 ~ 24813809 (+) True LOC103033951
XM_022672484.1 mRNA downstream 21579 24814910 ~ 24826100 (+) True LOC103046279
XM_007252023.3 mRNA downstream 56245 24849576 ~ 24882752 (+) True ptk2b
trnal-uaa_4 other upstream 462311 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 463916 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 465373 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 466113 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 630574 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 34343 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 141742 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 236706 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1126226 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1442167 26235498 ~ 26249096 (+) False G83602

Expression Profile