RNA id: XM_007252014.3


Basic Information

Item Value
RNA id XM_007252014.3
length 1814
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103034484
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24799032 ~ 24805385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGATTATTTTGAGGTCTGCCCATCACAGCTGCTGTTTTTTGCAGGAGCAGCCACACAGAGCCCCTCTTCACTCCTCGTCTGTCTTCTTCAGTAGTGCTGTCgTATTTTCTAAGAATGGAGAGTTGCAGCCAACCTGTAGATCTACAGGCCCCTAAGAGTGACCTCACTGAAGACCTGAGTAAACAATTAGAGGATATCATCAACACCTTTCAGGACACAGAGAAGCCGCCTGAGACTGAAGAGCCAGAGGAGGAGCCACTCACAGAAATAAAAGAGCCTGGCAAGGCCAAGGATCAGAAGCTCGAAAAGAAAATGCTTAAAGGCCTTGGCAAGGAGGCCACACTTCTGATGCAAAGCCTGAACAAGCTTGGTTCCCCAGAGGTGAAACTGGAAGCCCTCATCAAGAAGCATGCAGAGTTGCTGGAAGAGCATCGCTCAGACCACAAACAGTTGAAGATGCTACAGAAGAAACTGCTGCAGGTGATGAAGGAGAAAGACCAGCTTCAGAGTGAGCACAGCAGAGCAGTACTGGCCCGCAGTAAACTCGAGGGGCTTTGCAGGGAACTGCAGAGACACAACAAGACCCTCAAGGAGGAGACCCTTCAAAGATGTCGTGAAGATGACCTGAAAAGGAAGGAGATCACCACTCACTTCCAGAACACCCTTACAGACATCCAGGTCCAGATTGAGGAGCACAGCAATCGCAACAACAAACTGTGCCAGGAGAACAGTGACCTAGCTGAGAAACTCAAAGGCCTCATTTCCAAATATGACCAGCGAGAGGCGAATCTTGAAAAAGTGTTTAAGCACAGAGACCTACAGCAGAAGCTGTTGGAGACAAAACTTGCTCAGGCAAATGTGATAATAAAGGATGCGGAAGAGAAGCACAAGTTGGAGAAAGCGCATTTGCTAAAGGAAGCTGCTGAGGCCAAACTTCAAGTGACACTAATGAAGGAACAAGAGATGGACATGAAGGCCCAGCTTGCTATGTATTCTGAGAAGTTTGACGAATTCAAAGGAACTGTGTCAAAGAGCAGTGGTGTGTATGCCAGCTTCAAGCAAGACATAGATAAAATGtcaaagaagatgaagaagctGGAGAAAGAGGCCAATGGATGGAAATCACGATTTGAAGCATGCAATAAATCTCTTGTTGAAATGGTTGCAGACAAAGTGTTGAAGGAGAAAGAATTTGAGCTCTTCACACTCAAAAACCAAAACCTGGAGAAGCTTTGCAGGGCATTGCAGGACGAGAGGAAAAATCTTTATCAGAAGCTTCAGCAAAACCAGCTGCCTGGAACTGAATCTGACAACCTGGACCTTCAGGAGCCCTTAGGGGGCAGTGATGGAAGTTTGGAGGCCCAGAAACctaaagcagaagaagaaaccAAAAATGTGGGGGCAGAGGAAACAAAAGTGGTCCATTCAGATCCAAACACCCCTAAAGAAGTGCTAAATTACCCTCCTAAAGTTGCAACCCCCCTTACCAAAAAGCTGAATAATCTGAAGGCAGAAAAGGCCAGACTTGAAGAGATAGCGACATCTTTTAACATCTCTAACGTACCTGAACAGCCTGCTCTGCTTGCAGAGGCCTGCAGCGTTTCTGAACACTCTGAGACCACAGACTCTGTGCAGGGGCCTGAGGACCCTACAGAGGCCATCGATGATCTCGCTGATCTGGAGTCTCAGCTCAATGAAGCGCTCAGCCTCTCTACAGAAGCATGGTGTGATGAAAATCAAGAAACCAGAGACAAAGAAATGGAGACAGTTGACTGAATATATTGAAtgtcaataaaatgttttacacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112060 lncRNA upstream 26252 24771882 ~ 24772793 (+) True G83167
TU112004 lncRNA upstream 156390 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 162163 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 163847 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 179108 24619695 ~ 24619937 (+) True G83116
TU112074 lncRNA downstream 33145 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 87858 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 113040 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 126534 24931919 ~ 24932539 (+) True G83307
TU112322 lncRNA downstream 322575 25127960 ~ 25132154 (+) True G83354
XM_007252008.3 mRNA upstream 5714 24772806 ~ 24793331 (+) True LOC103032669
XM_007252007.3 mRNA upstream 5714 24780668 ~ 24793331 (+) False LOC103032669
XM_022673015.1 mRNA upstream 5714 24780668 ~ 24793331 (+) False LOC103032669
XM_015606544.2 mRNA upstream 27992 24765981 ~ 24771053 (+) True fuca2
XM_022673010.1 mRNA upstream 51240 24742969 ~ 24747805 (+) True LOC103045971
XM_007252011.3 mRNA downstream 2541 24807926 ~ 24813809 (+) True LOC103033951
XM_022672484.1 mRNA downstream 9525 24814910 ~ 24826100 (+) True LOC103046279
XM_007252023.3 mRNA downstream 44191 24849576 ~ 24882752 (+) True ptk2b
XM_007252024.3 mRNA downstream 44191 24849576 ~ 24882752 (+) False ptk2b
XM_007252025.3 mRNA downstream 44191 24849576 ~ 24882752 (+) False ptk2b
trnal-uaa_4 other upstream 488550 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 490155 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 491612 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 492352 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 656813 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 22289 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 129688 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 224652 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1114172 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1430113 26235498 ~ 26249096 (+) False G83602

Expression Profile