RNA id: XM_007252018.3


Basic Information

Item Value
RNA id XM_007252018.3
length 722
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC103035756
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24826165 ~ 24828725 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCCAGCTAGCCAGTTTCGGTTCCAACATGCTAAGCTAGTGGTAATTATAGAAAcatgctaacgctagctagcttacAGTATTCTACCGGCTACAAATAGACTGAGCAGCTGCTGAACTCCATAGATGTGCTCAGTTTAGTTTGCGTGTTTTTATTGTTCAATATGTAACTTAGCTAGAAATTGACGGATTTGTCAACGCAACTGTTTGTATTCAGGGACCGATTccgGTAGCTACAATGGCATCAgaagcacctcacaacttttcCTGGGTTGAACCTCACAAATTGGCTGGGCTGGCAATGCCAAGAATGCCTGGCCATTACCAGTACCTGGTGAATAATGGTATCAAACATTTAGTCACTTTGTCTGAGAGAAAGCCTCCGTATCATGACACTTGCCCCGAACTGACTTTGCATCACATCAGAATACACGACTTCTGTGCTCCAACATTTGATCAAATCAAACGCTTCCTGACTATAGTGGAAGAAGCCAATACAAAAGgagagGGTGTTGCAGTGCACTGTTTGCATGGCTATGGAAGAACTGGGACAATGCTGGCCTGTTACTTGGTGAAAAGTAGAAAACTCAGCGGGATTGATGCTATTAATGAAATTAGACGGATACGGCATGGATCCATTGAAACACGAGAACAGGAACAAATGGTAGTACAGTTTTACCAGCAAATTAAGtaatgaaataaagttaaataattaaaataaa

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112211 lncRNA downstream 12356 24813347 ~ 24813809 (-) True G83279
TU112188 lncRNA downstream 53423 24771882 ~ 24772742 (-) True G83260
TU112183 lncRNA downstream 55122 24765935 ~ 24771043 (-) True G83259
TU112185 lncRNA downstream 56855 24765935 ~ 24769310 (-) False G83259
TU112153 lncRNA downstream 61844 24763896 ~ 24764321 (-) True G83236
TU112236 lncRNA upstream 46764 24874256 ~ 24875186 (-) True G83291
TU112239 lncRNA upstream 55215 24882707 ~ 24882844 (-) True G83294
TU112251 lncRNA upstream 68404 24895896 ~ 24896616 (-) True G83300
TU112266 lncRNA upstream 104426 24931918 ~ 24932189 (-) True G83309
TU112270 lncRNA upstream 106685 24934177 ~ 24934642 (-) True G83313
XM_007252010.3 mRNA downstream 28966 24794749 ~ 24797199 (-) False LOC103033209
XM_022673017.1 mRNA downstream 29334 24794749 ~ 24796831 (-) True LOC103033209
XM_022673011.1 mRNA downstream 63420 24759382 ~ 24762745 (-) False LOC103031209
XM_015606498.2 mRNA upstream 3468 24830960 ~ 24846017 (-) False LOC103035024
XM_022673018.1 mRNA upstream 3468 24830960 ~ 24846017 (-) False LOC103035024
XM_022673019.1 mRNA upstream 3468 24830960 ~ 24846017 (-) False LOC103035024
XM_022673020.1 mRNA upstream 3468 24830960 ~ 24841358 (-) True LOC103035024
XM_007252026.3 mRNA upstream 55413 24882905 ~ 24891194 (-) True LOC103037621
XR_002650359.1 other downstream 190284 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 808509 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2201456 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2747304 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 209743 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1165007 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1606980 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 3007290 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3517097 28344589 ~ 28356545 (-) True G84215

Expression Profile