RNA id: XM_007252026.3


Basic Information

Item Value
RNA id XM_007252026.3
length 4299
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC103037621
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24882905 ~ 24891194 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGCTGATGATCCAGCCCATGAATCACAACCAGCACATGGAGACGCGCTCCTTCTCTATTGGTCCAGAATTCCCAGTGGGACCAGACTGATTCCAAACCCGCACCAGCAGCAGCCGAGACTCAGAGCGCTCACTCACACTGACCAACACCAGCCAGCAACACTCCAACTAACTCCAGCTAAAGATGAGCTACACCATTTAAATCAGGATATTCTTCACTGCTTCCCACTGGACCCTGGCGTTTTCCATACATAAGGATATGGGACGAGATCTAATACTGGTCTTAATGAAGACttcttttctctgctgtgtttgtttttgcgAGGCTGGTGATTGGACCCATGCCCATGCTGAAGACCAGCTGTTTAAAAAGCTCTTTAGTGGCTATAATAAGTGGTCCAGGCCTGTGCGCAACATCACTGATGTCGTAATTGTCAAGTTTGGCCTCTCAATAGCCCAGCTGATTGAtgtgGATGAGAAGAATCAAATGATGACGACCAATGTATGGCTTAAGCAGGAGTGGAATGACTATAAATTGCGCTGGAAACCCTCTGATTATGACAATGTAACATCCATTAGGGTGCCATCTGAGCTGATCTGGGTGCCTGACATTGTCCTGTATAATAATGCAGATGGTGAGTTTGCTGTGACCCACATGACCAAAGCCCACCTGTTCCACACTGGGAAGGTGCTCTGGGTGCCTCCAGCCATCTACAAGAGCTCCTGCAGCATTGATGTCACGTTCTTCCCCTTTGATCAGCAGAACTGCAAGATGAAATTTGGCTCTTGGACCTACGACAAAGCCAAGATTGACCTGGAGCGCATTGAGAACACTGTGGATCTGAAGGACTATTGGGAGAGTGGGGAATGGGCTATTGTCAACGCTGTGGGGACATATAACACGAAAAAATATGACTGCTGCCATGAAATCTACCCAGACATCACCTACTTCTTTATCATTCGCCGTCTTCCGCTCTTCTACACTATCAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTGTTCTACCTGCCCTCAGACTGTGGCGAGAAGATCACACTGTGCATCTCTGTCCTCCTATCACTGACTGTCTTCCTCCTGCTCATCACAGAGATCATCCCTTCCACCTCACTGGTCATCCCACTCATTGGCGAGTATCTTCTCTTCACCATGATCTTTGTCACACTCTCCATTGtcatcactgtgtttgtgttaaaCGTCCACCATCGCTCTCCAAGCACCCACAAGATGCCAGGCTGGGTTCAGTCCATATTCTTGGGCTTCATCCCCCGTTGGCTCTTCATGAAGCGTCCAGCTCCTGACCAGACGCGTCGGCGGCTGCTGCTTAACGCACAAGAGAAGAAGCAAGTTCCAAACCAAACGTCCAACCTCAGCACCTCCAGGAGCAGCTGGCTGCAGCAGGAGACAGATGTGGACATTGGAAGGTATCAGGATAGTAATGGTAGAGCAGGAATGGGTATTCCAGCTAGTTTCTCCTTCCCTACAGCTACGTCTCTACACCTGTCTGAGTCTGAGCCCCTGCTTCAGAGCTTGTACGACCTGCAGCAGCTAGGACACAGGATCAACCTCAATTCACGGCCAGTCAATCTCAGCAATCTGGAACCCGAGCCCAGACTGCCCTTCTCTCACAGTGTCATGCAGGCCCTGGAGGGGGTGCAGTACATCGCTGATCACCTGCGTGCAGAAGATGCAGATTTCTCAGTCAAGGAGGACTGGAAATACGTCGCGATGGTGATTGACCGTATCTTCCTTTGGATGTTCATCATTGTATGCCTGCTGGGGACAGTTGGCCTCTTCCTGCCTCCCTGGCTCTCAGGGATGATCTAGCGGTTTGCCCTGGGCTTACAGATACAGACATCAAGCTCCAGAGTAACTGGAAAGTAAGTGTGATGGACCCAGGACCTCCCCTAGAGAAACCAGCAGgaaattatactttttaaatgaaaggACAGGTGTCCTTAGTGCTTTTGGTCTCGGCACCTCCACAGGGTTAAATGGCTATGAATTTTAATAGCAGCCTTGCTGCCCAGACCTTTCCTGCACTGAGGTGTCTTGGGTACAGTGTTGGTGATGTaatgtgtgtgggtgagagCATATCAGTTCACTCAGGGATTACCTGGGGTCACAGTTCATTGTCACAATAGTTCAGATCTTCTCAGCCGTGACTTCACCCATCAGTCCTGTGTGAGAAACACTCGTCACCTCTCAACAAATGCACTGACATTTCCTGCTATCATTCTGCCATCCGAGCCCATTCACTTCCACATGCATATAAAGCCAGCCCCGGCCGACGTAATATGCAAAATTAACCTTTATGAAAGAGGCGAGGGATATGTGACCCTGACTGGGACCAGTTCAGTTCAATTTCCACTTTATCCTACTATTAAATGAGTCAGAGACGCCTTTTTACTCTCAACAGCAATTACCCAGCAGGTCAAAAGTCCTCCTTCTTTCATGGCCGCAAAGTTTTGAAGAGCCACTGAAGAAGCAAAGCTTCAGATTTTATGTGGGTTGTGTAATTAAGTTGCAATCACAGCGCATTCCatcattttagaaaaatatgatCTCTTAAAATAAACGGAACAGATGTACAGTCATTCGTCTGATCATTATTTTAGTACAGTGCTCATGTAAAAGAGGAGATTAAAGAACTGTGACTGAAAATGATCTGCTTCCATAATCAAAACTGAATCAGGCCGAGGTTGTTGCTTTGATTTAATTAGGAACATGCTTCCTAAGTGATGTTTTAATTCCAGGGATTGATGATACACTGTGAGTTGGTTTCCCAGacatggattaagcctagtcctatattttcctttcaattaaaaatcaaatttCAGGCCTAATCTCTGTTGGGAAATCTGCCCCTATGTATCAAattgtttgtggacaccccttttaatGAATGTATTCAGCTACATTAAGTTGCACTCACTATTAACACAGATGAGCAAATGCACACACTTGGCAGCTTGTCTAGGCCCTACAAAGAAGTTTTACCAAATTAATAGTTTATCTGGAATAGATACATTTAAGTGTATCAGCACCATGCTTAATGCCAGGTGTTTGTAAGAGGACTATAACCCCcctagcattgagctgtggtgCACTGgaattgtgttctctggaatgatggtgctccatttgATACCTTTGAGATGAGTGTGGGAGTTGGGGATGGTGAGGTggagtggtgatcatccaacatcctgacctcactaacggTGGgtgctcttgttgctgaattaCAATCAAcactcctcacagcaatgctccacaaTCCAGTAGAAAGCCTCCAACAAAATCAGGAAGTTAATCATTACAGagttaaataaaagcaaaaaatgtgGATAATTTCCCTTTTTTCAATTTGTAACCAAATTTGTAAGCAAATATCGTCTTGCAGGCCTTCATCAAGGTTAGATTGGACCAAGGAATGGAATTGTTCATTGTTGTTGGGATTTTTAATGTCTCTTAAATGCAAAAAGACATCTATATAAGGTTTCTTTGAGAAACAATATATGAAAAATTAACTTTGGACTGGAGTTCAGGTGGTTTCTGCTTGTCCTTGGAAGCCAATCTTGTTGTGAACATGTAAGCAAGTTAGATGTGTTTATAGATTGTTAGACTGGGAGGAGGGGCTTCAGCCACGTTCATCGTAAAACTGTTGTAATAACACATCCAAATAAGccaattttgtttatttccacTGTAGTTCAACAAAACTGGATATATGGAGCacccaaatgaaaaaaaagtccaaaaatataacaaaagtaATCTTTTGGCTGGAAATCGCATACAATTCTGGTCCTGGAGGGACGAATTCCCGCAGTTTTTAGCTTTTCCTGCTCAGCACTCCTGAATCGACTCACCTGTTACTTGCCAGGTTTAGTAGGTCTGTTAAAGCAGAGCAATCAGAAACCTGTGTTAGACTCCATTCCCTGTTGCCCATGCTTGCTGTATGGTATATcatcaaaaaagaaataattaccatttaaaacaaatgaaaaaaaactgttcataCCCTGATAAAGGCCAACAAGAAGAAATGCACTAGTTGTAAATAAAGTGTAGAAATCTTCAGTCATTAAGTGTTGCTGgttttactctttttaaaaataaagaatattacaGTAACTCATCCAGAGCTTTCCCTGATGGAGAGACATTTGAGATAACTCTTGTGTTGTGTAACGCTCCCTCTGCTGGTTATCAGTGCAGCAGTCTCTTTTGTTTGAAAGGTCAAAGCTGAGTGTATG

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112239 lncRNA downstream 61 24882707 ~ 24882844 (-) True G83294
TU112236 lncRNA downstream 7719 24874256 ~ 24875186 (-) True G83291
TU112202 lncRNA downstream 25049 24801327 ~ 24857856 (-) True G83271
TU112211 lncRNA downstream 69096 24813347 ~ 24813809 (-) True G83279
TU112188 lncRNA downstream 110163 24771882 ~ 24772742 (-) True G83260
TU112251 lncRNA upstream 4702 24895896 ~ 24896616 (-) True G83300
TU112266 lncRNA upstream 40724 24931918 ~ 24932189 (-) True G83309
TU112270 lncRNA upstream 42983 24934177 ~ 24934642 (-) True G83313
TU112276 lncRNA upstream 44923 24936117 ~ 24936621 (-) True G83316
TU112349 lncRNA upstream 98624 24989818 ~ 24991371 (-) True G83373
XM_015606498.2 mRNA downstream 36888 24830960 ~ 24846017 (-) False LOC103035024
XM_022673018.1 mRNA downstream 36888 24830960 ~ 24846017 (-) False LOC103035024
XM_022673019.1 mRNA downstream 36888 24830960 ~ 24846017 (-) False LOC103035024
XM_022673020.1 mRNA downstream 41547 24830960 ~ 24841358 (-) True LOC103035024
XM_015606496.2 mRNA downstream 54180 24826165 ~ 24828725 (-) False LOC103035756
XM_022673026.1 mRNA upstream 48844 24940038 ~ 24954966 (-) False LOC107197685
XM_022673025.1 mRNA upstream 48844 24940038 ~ 24954966 (-) False LOC107197685
XM_022673024.1 mRNA upstream 48844 24940038 ~ 24954966 (-) False LOC107197685
XM_022673023.1 mRNA upstream 48844 24940038 ~ 24954966 (-) False LOC107197685
XM_022673027.1 mRNA upstream 48844 24940038 ~ 24948180 (-) True LOC107197685
XR_002650359.1 other downstream 247024 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 865249 24012634 ~ 24017656 (-) True G82991
TU111392 other downstream 2258196 22622355 ~ 22624709 (-) False tex36
TU111062 other downstream 2804044 21946740 ~ 22078861 (-) True LOC103042297
TU112362 other upstream 146041 25037235 ~ 25041018 (-) False LOC103040243
TU112655 other upstream 1101305 25992499 ~ 26003685 (-) True G83612
TU112771 other upstream 1543278 26434472 ~ 26470163 (-) True cga
TU113207 other upstream 2943588 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 3453395 28344589 ~ 28356545 (-) True G84215

Expression Profile