RNA id: XM_007252060.3


Basic Information

Item Value
RNA id XM_007252060.3
length 3884
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC103021856
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25718474 ~ 25724909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGCTTTATAtgtaagctgtattttttttgcttctttttaggagagataatGGATCATGAAGGGAGAGGAGGGAATTTCATCAGTCATCTCATGTGTTGGATGGACCTGTACCGTTTCAACCACTGGGAACCCGAGCACCACACCATTATTAATCCTTATTTGACAGCATGGATAGGGTGGTGtttgattttctttcttttttttttcttccttcttttcttctttgctCGCTGTGTTCATTCGTGACATCACTGAGCCACTAAAAGCCACATGGGCAgaaggagagaggaagagaaggagagagagtgtcAGTGAGAACAGTGCGCACACCAGACTCCACcaagctctctctttctctctctatctgtctatagGAGGAAAACCAGACCTTCTGCTGCTCTTCTGACTTGACTTCAGGAGGTCCATGCGTTTGGGAAGCTCTCAGAGATGGATGTTTTGGATGGAGGACCCTGAGATGGAACCAGCAATGATTTGAAAGGAAGTAACCAATTACTGGTGCTGGGCAGCTGAGTTCTGAAGAGTTTGGAGTTCTTCTGCTGGACTTTCTCCTCTGGAGCTAGCAGTGCGTGCACGTAGTTAGGGCACGCGCGTACGCACACACGTTTACGCGCGCATACTGCATACACCCACCACAGCACTCAAGGTCTCAAAACACAGTTGGACTCGATTGGACAAGGTGGTGAAGGTAGACTACAACTTCTGGTACAATCTGGATTGATTCTTCAGTGGAGGCTTCTACATCTTATCTTCCTCTACTGATGGACAGACTGCGAGTGCTTGGTTAGAACCTGCTGAGGAGGTTCTCCAGTTCTTTATCTGGGACTATGACTTAGGGTCCCAACCGTCTACGATACGCTTGCGTTTTAACGTCCAGCAGACGTGAGCAGGATGAGGTCCAACTTTAGAAGCTAGAAGaagaataataagaagaaggacataaaggaggaggaggacccACAGTGACGGACATGGCTAAGTGGTACCGGAGACGCCAAGTGGACGCGCGCCTCTGCCCGTGCCCGTGTGATTAAGCGCCACCAGCCCCCAGGTCTTGACCGACCGGGCGCGcgcctggctggctggctggctgggtGACCATGCGCTCCGCCGCGCTGCGCCGCGCGCTGcccctcctgctgctgctactggCTTACGCGCGTCTCGGGGGCTCCGCGGGGCTCGTGCCCGAGCCGGGCCGCAGGAGATACGCTGCGCCCTTGTCGCAGGACACCCTCAGCACCTTCGAGGCGCGACTCCTCAGCCTCTTCGGCCTCAAGCAGAGGCCCACCCCCAGCAGATCCGCCGTGGTTCCGCGCTACATGCTGGACCTGTTCACTGCGTACTCCGCCAACGCGGAGCCAAAGCACGGCGCGAGCAGGCGCGCGCTCGGGAGAGAGTCCGAGAAGTCCGCCAGCCGCGCGAACACCATAAGAAGCTTTCACCATGATGAATCTACAGAGCAGCTGTTGAGTCATGGCAGAAAGACGACTCAAAGGTTCCTCTTCAATCTGAGCTCCATCCCTGGAGAGGAGTTTGTCACTTCAGCCGAGCTGAGGATTTACAGGGAGCAGGTCATGGCGGCCACCAatagcaggagcagcagcaacagcagcagcctcGCTGGGCGCCATCGCATTAACATCTATGAGATCATGAAGCCTGGGCGTCCTTTGAAAGAGCCCATTACGAGACTCCTAGACACCAGGTTGGTGCAGCACAGCCTGAGCAAGTGGGAGAGCTTTGACGTAAGTCCGGCCGTCTCGCGGTGGACTGCCGAGGACCACGCCAACCACGGCTTTGTGGTGGAAGTGGTTCACCCGGAAGACGCAGACGGGGACTACAAGAAGCACGTCCGAGTCAGCAGATCGCTGCATGACAGCGAGGACTCGTGGCCACAGATGAGGCCTCTGCTGGTGACGTTCAGCCACGACGGGAAAGGACATGTGCTCCACAGCCGGCAGAAGCGGCAAGCGAGGATCAACAAGCCGAAGAAGAAGCACAAAGCCAACTGTAGGAGGCATTCCCTCTATGTGGACTTCAGCGACGTGGGCTGGAATGACTGGATAGTGGCCCCTCCAGGTTACCACGCCTTTTACTGCCAAGGAGAATGCCCCTTCCCTTTGGCAGACCACCTCAACTCCACCAACCACGCGATAGTACAGACGCTGGTGAACTCAGTGAACACAAACATTCCCAAGGCCTGCTGCGTGCCCACAGACCTGAGCCCCGTGTCCCTGCTCTACCTGGACGAGTACGAGCGGGTGATCCTGAAAAACTACCAGGACATGGTGGTGGAAGGCTGTGGGTGCCGCTGATGGACCTTAAgcagagacttttttttttgcgaagacACTTTATGACCCAGTACTACACTTTTATTTATGCTAaagtaaaaacacatattttggaaACAAagtatataaagctatatttatgTCCATTAatgggaaaataaatatttttaattggagtTCAGCTAATGTATTTTTCTGATGTACATTTCAACTAGTACAGTTCCGCATATGAAGTATACAGctcagattttttgtttttgtatttatttctagCATAACCACTTTTAGGGAatagtttaaatagtttatatatctatttatgtGTACtcaaagcaaaaatatatatacatatagatgtGTAAAACATCCACAACACACCGTACCACCATAGATTGGTTTATGTGTCTCCTATCATTTCTAGAGTGGAAAGCAAGGCTTGTGTATTGTGAGTTGATGAAGATTTAAACCTAATGTTAAGCGTTTCAGTGACAGTCCCATctgccttaattttttttagtgtcACATGAAGCACTGAATAGGTTGGATTTCCAGagagagattaagcctagtcctagacTCTAGACCTAGTATCTCTTCCAGTGGAGAATCCCCATTCACTGTGCTGTATGCTCTgcgactaggcttaatccctgtctgggaaaccagTCCAATTGGTTCAGTTAGTTGAGTAATCCAAAAGCATGCACTCCAGTTGGGCCTTTCCTGCAGTGAGAAGCAGTGGTGAATGTGAATGCACTTATCTAGAAGCAATGTGACAGGTAGTTGACACTGAATGCTCAGGAACTTTGGAACTGTTGGTGTGCGTGAGGTCTACAGTGCGAGCCTATGAAATCTATCAATAGCCTTACAGACAGTTACTATATGTCCTTCTCATTCTGATGCATGGGTTTCCCAAAGGCTAATCCATTCCCCTTTATagacccaatcccatttctcaaTTGTAACCAACCCCTTGTTTTCACTCTTAAGTGTTGAAATCCTCCCTCTAAGAAAAGGGACACTGTGATACGTTGTCAAAACTGTTAGCGATGCTCTGAAGGCAACCCTGTCACCTGTTTATGGCCACTCCTTATTCATTTGTGATAGGGAGCTGAAGTTAGCTAGACATTCACTATTTTTTGTTCAGCTAATTTGCCTGTTCCACCGTAAATCATGCAGGAGCCGCAGTTGTAACTGAATGTAActgctgcatcatttaaggtggaatgtgaAATGTATCTGAACTATACTAGCAATGTTTATTCTTGTTAATAAGAAAGGGTGGTTATCATATTTTTGAACAAAGAAAGCACAACATTGGTGGGTCTCTTCGGTCACTTGTGCAGCCATCTTGCCTGTGGATTTTTTATTGTAACAAATTGTTTGGAAGAAAAATCAGGAGggccataaataaataaatgtagccACAATGCTTCACCCTACTCCCCTATCCCAACGAGAATTGGAGCTCCCTAAACCCCTAGGTGTGATTGCACAAAGTGAaagggtaagtggtagggcaaAAGTTTGAAATGTGTTTGGGCCATAGTGAAGTCTTAGTAAAGCC

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K21283 BMP2; bone morphogenetic protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112455 lncRNA upstream 181204 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 222814 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 254221 25463900 ~ 25464253 (+) True G83446
TU112437 lncRNA upstream 330884 25370251 ~ 25387590 (+) True G83440
TU112538 lncRNA downstream 73551 25798460 ~ 25802452 (+) True G83522
XR_002650361.1 lncRNA downstream 259772 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA downstream 259772 25984681 ~ 25993012 (+) False LOC111193229
TU112638 lncRNA downstream 510007 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 510589 26235498 ~ 26253602 (+) True G83602
XM_007252046.2 mRNA upstream 1028 25715058 ~ 25717446 (+) True gdf3
XM_022673052.1 mRNA upstream 27580 25684805 ~ 25690894 (+) True crls1
XM_022673049.1 mRNA upstream 34636 25667714 ~ 25683838 (+) False mcm8
XM_007257443.3 mRNA downstream 110231 25835140 ~ 25902250 (+) False LOC103033987
XM_007257442.3 mRNA downstream 110238 25835147 ~ 25916844 (+) True LOC103033987
XM_007257438.3 mRNA downstream 194648 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA downstream 194648 25919557 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA downstream 194648 25919557 ~ 25971814 (+) False LOC103033015
TU112312 other upstream 684353 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 782924 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 890718 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1407979 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 1409584 24308808 ~ 24308890 (+) True trnal-uaa_3
XR_002650360.1 other downstream 194648 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 510589 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 667981 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 783131 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 1002914 26727823 ~ 26747751 (+) False fermt2

Expression Profile