RNA id: XM_007252178.2


Basic Information

Item Value
RNA id XM_007252178.2
length 5549
RNA type mRNA
GC content 0.49
exon number 13
gene id elmsan1
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20213109 ~ 20246310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttcttctctctgttgAAAACAGCAACACGCAGGACAGAGGGGAGTGCTGTGTCTTCAAACTGCGACCTGAAATATCGAGGTTTTCACCAATGAATGAGCGACACAAGCAGAGCTCCAGGAGACCCAGTTTGATTTGATATCTTAGAAGCGGTGGAAGACAGTGAATTTGAAAGAAGACTCAAAGAAAGCCAATAGACATGTTTGAGTATCTGTCAATTGATACTGTGGTTTCTGCAAATGGGATGCTGCAGTTTTGCACCTTAAAACTCACTTCCATTCCCACTATGCTAAGCAGATTTGGATGACCACAGACTCTTTGAAACCTTGTGGATACTTTTGGGGAATAAAAGTGACGTAGATATTTCATCCCACTGGAGAAAGCTCTGTGTGATTTGGGGACCTGAACTCTTCTTGCCCCTTCACGAGCCCACTCCAGCCCCCTATCAGTGTCCTTATTCATGATAGCCATGAGTCTGCCACCTCAACAGAAACCCAACACAAAGAGGACAGGCAAGCGCATCACTTTCTTTAACGACCAGGCCGTTGCAATGAAAGAGGCCTCTCAGCACACAGAGGGCTCCTACTATGGCCTGGGGGGCCCTCAGTCAGAGCAAAGCCACagtgaggctggagcagtggaaaGTTCTAACGCTGAGACGCAGCACATGTACCTCAATTCTGTTATTTTCAGCCCAGAGAAGGGAAATCAAAGTCGTGGACATTACCAGCAGACCATGCCCATGAAGTGGTCACAGCAGGACCCTTCTCAGCAACCTCAGGAGAGGCCTGTGGCGTGGCCCCATGGTGGCGGTATGAGTTTTGGTGAAAGTTTTAGAAAGTTCCTGAGCACTCAGCCTGGTTTTACTAAGCAAGTTCATGAAGGTATGGCAGTGCCACAGCAGCAGCTGTCCTCCGTAAGAGTAGCGGTAAAGCAACAGCAATCATCTAATACGGGCGGTGAAGCCTTTAGGGATGCTCCTAAAACCAATAGGGGTCTGGACTGGGAGCAGCATCAACAACAaaatcatcagcagcagcaagcCTTTCAGCAGGGCCACAAGCCTGGAGTCTTAAATCCTCAGCAACATGTGGCATCCAACACTGGGAACACATCAGTGCTCCAACCCTTTCAGTTAGCTTTTGGGCAGCCCAAGCAAAACCTGGGTTACTATCAGGTGTTTCAGGGTAACAGACCCTTACCAAATTTGAACTACAGTGCCCAGACAAATTCCCAACACCAGATTCAGAACATACAGATGCAGCAGCAAGACCAcctgcagcaacagcagcagattcAGAGACTGATgttgcagaagcagcagcagcaacaccaGATTCAGCAACAGCTTCAACAACAACAGcatctccatcagcagcagcaggtacaacagcagcagcagctactgCAGCAGTCACAACAAATTCCACACTTGCAACAGCAAGCACAGCAGCTAACCCAGATGCAGCAGCAGTCACAACAAATACAACAAATTCAAATGCAGCAAGTCCAGCCactacaacaacaacagcaagcgcagcagcagcagtcgcAGCCACAGCAAGGTCAAGCGCAACAGCCGCAAGTTCAAAAGCAGCACAAAGTCGAACCAATGCAAAAACTGCAACAAAATCAGAAAGTAATGGACTATTACCCTAGTGGCCAACAACCTGCCCCTTCACAATCTGAACAATCTAAGTTAACTGAAAAGTCTCAAGATGAACCACCATCAACTCGGGCCAAGGACCTCCCTACCCAGCAACCTCCGACTGTTTCTCAGCCAACCTCAGAGGCACAGCAACTGCAACCTGGGCCCCGTAGATCTCGACGCCTCTCGAAAGAAGGAGGAGGACCCTCTGACAATCCCTTCCTTGTGCCTGCTGACCACCAGGCGCAAGGCTCTCACAATGGCGCCCATGAAGCCGGAGAGGCTGCAGCCAAACAGGGCATTCGAGCAGCCCCTACAGGAGTCATCCAGAGCACTCGGCGCAAGAGGAGGGTCTCTCAAGAGGTCAACCTCGAGACTCTGGCTCAGAAGGCCTCAGAGATGGAGTCCCTACCCTCGCATAATGTTAAGGAGGCACACAGACCCTGGAGCCCCTCTGCCTCAGGCCCTGGCCGAGGGGTCAGAGAGATGGAGGGGGTGAGTGCGAAACGAGCCAGAGAGGAGAATCTGGTGCCATTGGTTATCCCAGTGTCAGTGCCTGTGCAGCGAGCTGATACTGCTTCCTCAGATAAGGATCAGGCCTCTCTCTCGTCAAGCTGGCCTCTGCGGCCTAATGACTCCGGCCGGCCGGACCACAAACCTTCAGTCATCGTCACACGCCGGCGCTCACTTCGCAACTCTCTTTCTGAAAGCTCCAGTCAGAATGGTGGATCAGAAAGCGGTGGAGATGGTGAGGGCAAATCGGGCAAGTCGAAGCGGCGGCCTCGTCCGGAGCCTCTATTTATTCCACCGCCCAAACAGGTCACCTTTATTGCCCCGCCCATCTACTCCAGCATCACACCCTACCAGAGCCACCTGCGTTCCCCAGTTCGGCTGGCCGACAACCCCCTCACCCTGCCGCCTTATACCCCTCCGCCCATCCTCAGCCCAGTACGAGAGGGCTCAGGACTTTACTTTTCCACTATCCTctctgctgcagcagcagctgccAGTACCCAGGGCCTGCCTCCGCCCGCCACGCCCAAATCTGCAACCCGCAGCCTCCTACGCTCCAACAGTACAGAAATCACCCCACCAGTGCTCTCTGCTATGAGCGAGGCCACTCCTGTCAGCATTGAGCCGCGTATAAACATTGGGCAGAGGTACCAGGCAGAGATTCCTGAGCTGCGGGAGCGTTCAGCTGCTAAACTCGACTCGCACAAGGCTGAGCTGGTGTGGGCGCCGGTGCCTGAGCTGGAGTCCAAAGGCCAGCAGCAGGAGAGAGTGGATGACCTCATGCACCTGGCTTGCTCCAGTGTATTGCAAGGTGGAGGGACCAACCAGGAGCTAGCCATGCACTGCCTCTATGAGTGCAAGGGTGACATCATGGGAGCCCTTGCCCTCCTTTTGCTGAAAAAACCCATCTTTCCCAAATCACACCCTCTGGCAGACTACCATTACTCTGGCTCGGACAGTTGGACGGCCGAGGAGAGACGCTGCTTTAACAAAGGCATCGCTTCGTGCAAAAAGGACTTCTTCATGGTGCAGAAAATGGTAAGCTCCAAAACAGTGGCACAATGTGTGGAGTTCTACTACACCTATAAGAAGCAGGTTAAGATCGGCAAGAATGGCACACTCCTGTACGGAGAAGCAGAACTACCTGAAACACGGCCCACAGAAGAGGAGGTGGACTATAAAAGTTCACAGAGATTTGAATTGCGAAAGGAGGAAGAAGTAGTCAGGAGGTGGGAAGGGTTGGCTGACAAGAAGAAAGAGAGCAGTCCTGCCAGAGTGGCAGAACCAATAAAGCCCACTGAAAATgctgggGCGGTAGTGGTATTGAGGAATCAGGGGGATGTAAAGAGGGAACAGCCTGTCTTTACGGTCAGCCGTGCTCCACCAGCACCCCCTAAACCTCGGCAAGAGACCCCGGCGCGGAAGACCGGGGCCGGAGCCAAGGCTGCGGTGGCACAGGAGGGAGAGTTCCCCTGCAAAAAGTGTGGCAGGGTGTTCTATAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGCCACGCAGAGCAGGAGAAGAAGGCGGCGCTTCTGAAGCAGCGCGAGGCCGAGGAGAAGGCggcagcagcggcggcagccTTGGCAGCAAGCCACCAAAACGGTGCACGAGGGCAGCAGGTGGGGCTTCGGCGAGCCAGCAGTGAGGACTCCTCAGATGAGGATGAGGACGCAGATGATGAAGACTGGCACTAACAAACACTGACTGACACTCCTTCTACATGGAGGATCAGCGGGCACTTCTGCAGTCGGAGCTGATAcacccgtgtgtgtgtgcgtgcgtgaaGTGCTGTGCATTCAGTCCGGAGGCTCAGGCTCTGTTGCTGTGTCCTCAGTGTAGAGCTGCACAATGTAgactaaatgtttgtggacactccttttaataaacatatttagctgaacctgttggcaccatgcctaataccCAACACAAGGCTTGAGCTAGAGGGACATGGAGCTGTGGAGCAGGGGAACtgtattctctggaatgatggtttTTCATCCACTCCTTTTGAAAGTAGTTGGCCAGTTAGGCATAATATGGGCTGGTGATCTTCCAATGTCCATACAATCTAATCCTCATGGCAATtctttaaaattctttaaaatctagtaaaaagtcCTCAGATCCTCTTGACAAAAGCATTATGGGTTCTTATTGAAATCTAAATACTCTTAATTTCAGATGagcaggtgtctcaatacttttgcccatatagtgtatatgcCTGGCATTGTGTGGTACAACAGGAACATGTTACTGGTTCATGTgataatatgaaaatattaatgtaaaatttgtGAGGTAGTGCACGTATCAGCTGATACATAGATTATTTAGGAGTTTTGCCGTttagataaatataataatatattttttggtaatACAAATGCAGGGAAATTAATAACATGCAGTATAAAGTATTACCTAAACAGTCAGCTGCAtttaagatattaaaatatcaatTCAAAATATTAGTCAATTCTTaacatatgaaataaaaaaataaaatagtttaatttaatgtcaGTTCAAATATTTGGGGATGTGCAAAATCAGGTATTATGAGTTCTGAGTGCTTTCAACCTCCACTCATATCAATATAGTATCGCAATACTCAATATTtaacaaacaatatattgtgcagccctacactCTGGACATGCAATAGATGCACACCTTGaagggattgtgtgtgtgtattaaagggagggtaagtgtgtgtatgagtgtgtgtgtgtgtcctataGGCATTCAGGGTTTTTCTTTCAGGCATAGGGCTACAGGGAGTACAAgcctgtgtatgtatgtgtgtgtgtatgtagagaAATGGATGGTACAGAGCACTGTCCTTCAGCACTTTCAGACTCTCACACGTACACGCATTGATCTGGGTACAGCTCAAGAGGTCCATCATGCCCCTCTACGCAACCAAACACAAGCCTCGCTTCGTCCCTTTATTATCCACCGTGAATAAACTGCAGGATATGCAGGACAATGCAGGAACACAATGACAGACTGGAACATGTGttcttctattttcttttctaaaagaaaagaatataaGTCGCAATTCACGGTATTTTTTGCCGGCTCTTTCCCAGTTGACTGCCAAAAGCTTGCACAGCCATGCTCCTgatctttctctgttttttctagTGCTGTACCTTTTCTTTTTGGGTTATGTTTTCTTATGGCCACATCGCTGATGCCTTGGATGTTCTTGACCATGTTTTATCTTTACATGACAATCAATTTTACAAAGGTTCCTTTTTATATCCAACAAAGTATCGTTGTTATTCATATATTCATGACTTATTgttatctttattattattattattattattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110406 lncRNA upstream 25956 20185814 ~ 20187153 (+) True G81913
TU110373 lncRNA upstream 33579 20149777 ~ 20179530 (+) False G81899
TU110374 lncRNA upstream 33579 20149777 ~ 20179530 (+) False G81899
TU110372 lncRNA upstream 33579 20177054 ~ 20179530 (+) True G81899
TU110304 lncRNA upstream 221380 19990539 ~ 19991729 (+) True G81856
TU110414 lncRNA downstream 15289 20261599 ~ 20272723 (+) True G81919
TU110415 lncRNA downstream 54968 20301278 ~ 20301732 (+) True G81920
TU110457 lncRNA downstream 125804 20372114 ~ 20372392 (+) True G81955
TU110492 lncRNA downstream 297401 20543711 ~ 20543911 (+) True G81983
TU110524 lncRNA downstream 526446 20772756 ~ 20776477 (+) True G82014
XM_022672912.1 mRNA upstream 13270 20184910 ~ 20199839 (+) True tmem62
XM_007252180.3 mRNA upstream 38800 20161268 ~ 20174309 (+) True LOC103035446
XM_007252188.3 mRNA upstream 58427 20150418 ~ 20154682 (+) True LOC103037509
XM_022672891.1 mRNA upstream 384904 19800197 ~ 19828205 (+) True LOC103040036
XM_007252195.3 mRNA upstream 445801 19765336 ~ 19767308 (+) True LOC103039716
XM_022672917.1 mRNA downstream 145060 20391370 ~ 20446806 (+) True mta1
XM_007252559.3 mRNA downstream 201600 20447910 ~ 20464852 (+) True tmem229b
XM_022672923.1 mRNA downstream 468113 20714423 ~ 20771645 (+) True LOC103044638
XM_022672928.1 mRNA downstream 531128 20777438 ~ 20888798 (+) True slc25a21
XM_007252556.3 mRNA downstream 531128 20777438 ~ 20888798 (+) False slc25a21
TU110179 other upstream 539471 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 547062 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 1282355 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 1692162 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 1749013 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 2111334 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 2984120 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 3629129 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 3629129 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 3663372 23909682 ~ 23920698 (+) True G82811

Expression Profile