RNA id: XM_007252180.3


Basic Information

Item Value
RNA id XM_007252180.3
length 2830
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC103035446
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20161268 ~ 20174309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACTGATTCTTCCTCTTGTCAGCATTGACCTCTCAAGATGGCAGGACTGCGGGCTCTCGGTGTTCTGTCCAGAATCACAGTGCGGCACAGATACACACTGTTTTCAGATTCCACCAGAAGAGGCTTCAGTGTCGCTTCTTCCTTAATGGCTCGCACGCATGTAAACTATGAGGTCAAGGGAGATGTGGCTGTTGTTCGGATCAATGACCCGACTTCAAAGGTGAACACACTGTCGGTTCATATGCAAAAGGAGATGGCAGAGGTTTTGGGTGAGGTCTGGTCCAACGATGCAGTCAAAAGTGCTGTACTGATCTCCTCCAAGCCTGGCTGCTTCATTGCAGGAGCTGACATAAACATGATCCAGGCCTGTAAAAGTGCAGAGGAAGTAACATATATCTCTCAGGAGGGGCAGAAGATGTTTGAAAAAATTGAGAAATCCCCTAAACCTATTGTTGCTGCTATCAATGGATCATGTCTTGGTGGTGGATTGGAGTTTGCCATCGCCTGCCAATACCGAGTGGCCACAAAGAGCAAGAAGACTGTTCTCGGAACTCCTGAAGTCCTGCTGGGTCTACTGCCTGCTGCCGGAGGAACACAAAGACTACCAAAAATgGTTGGTCTTCCCAGTGCCTTTGATATGACTCTGACAGGAAGGAACATCCGTGCAGATAAGGCCAAAAAAATGGGTCTAGTGCATCAGTTGGTCGACACTCtggGTCCCGGACTGAAGGGCCCGGAGGAGCGAACTATGGAATACTTGGAGGAAGTAGCTATAGAATGCGCTCGTGGAATTGTTAACAAGAAAATTCCACTTACTAAAGAAAAAGGCATGATGCAaaAAGTACAAGACTACGTTATGAGCTTTCCATTTGTGCGAAATCAAATCTACAATACTGTGCAGAAGAAAGTGATGAAACAGACCAAAGGCTTGTACCCTGCACCACTGAATATCATTGATTGTGTGAAGTCTGGTGTTGAGCAGGGATCAGATGCAGGATACCTAGCAGAGTCACAGAACTTTGGCAAATTGGCAATGACCACTGAATCTAAAGCCCTTATTGGACTGTACCATGGCCAAGTCGCCTGTAAAAAGAACCGATTTGGAGTTCCAGAAAAGGAGGTTAAAACCTTGGCCATCTTGGGAGCAGGGCTGATGGGGGCAGGCATTGCTCAGGTGACCGTGGACAAAGGAATTCACACTATTATGAAGGACACCACACTGGAGGGCCTCAACCGGGGGCATCAACAGGTTTACAAAGGACTGAACGACAAGACCAAGAAGAAGAGCATTACATCATTTGAAAGGGACACCACGCTCTCCAACCTTACAGGACAGCTGGACTACAGTGGATTCCAAAACGCTGACATGGTTATCGAGGCTGTATTTGAGGATATTGCTATCAAACACAAAGTTATAAAAGAGGTTGAAGCTGTCATTCCTCCACACTGTATATTTGCCTCCAACACATCAGCCCTCCCAATCAAAGACATTGCGGCTGCCAGTAAACGACCAGAAAAGgtgatTGGAATGCACTACTTTTCTCCAGTGGACAAAATGCAGCTTCTGGAGATCATTACTACAGACAAAACTTCTAAGGACACCACAGCCTCTGCAGTTGCAGTCGGCCTGAAACAGGGCAAAATCATCATTGTAGTTGGGGACGGACCTGGGTTCTATACCACTAGATGCTTGGCTCCCATGTTAGCTGAAGCTGTCAGGGTTCTGCAGGAAGGAGTGGACCCCAAGAAGCTGGATTCACTGACTACAGGCTTCGGGTTTCCAGTGGGTGCTGCTACTCTGGCAGATGAAGTGGGCATTGATGTGGCTGCTCACGTGGCTGAGGACCTGGGCAAAGCGTTCGGCCCTAGACTTGGTGGAGGAAATCCTGAACTTCTCAAGACAATGGTGGAGAAGGGGTTCAAAGGTCGCAAGACCGGTAAGGGTTGCTATGTCTACCAGCCTGGGCTCAAGAGCAAAGAGGTCAACATGGAGCTTAATGATATTCTGGAGTCTTTTAAGCTGACACCAAACCCTGCAGTGTCGTCGGACTCAGATGTGCAGTATAGGCTGGTGTCTCGCTTTGTAAATGAGGCTGTGATGTGCCTACAAGAGGGCATCCTGGCCAACCCAGTGGAGGGCGACATTGGAGCTGTGTTCGGTCTTGGTTTCCCACCATGCCTTGGAGGTCCTTTCCGATTTGTGGACACCTTTGGTGCAGACAAACTAGTGGAGAAGATGAGGAGGTTTGAGGACGTGTACGGAAACCAGTTCACTCCATGCCCACTTTTGCTTGATCATGCCAAGGATCCGAGCAAAAAATTTCATAAGTGACCTCATCATGTGCCATTAGAACTAGCTGCAGTATGAattctcattttcattttttaaggaTACAATGGCTGACCTAGTGTACTTCAAGCGAGAggtttgaatgtattttaatgtgaaAAGAATGTTATCATGCGAACATAAAGAGAATTACTATGTGCCCAAGTAATATTAAGGTAGCCTTTATACAGAATTCTAATCATGTTTGGgttgtttttgtttaacatATTTGATAGTTTTGTATTTCTAATGTAAATGATGGTTAGACCCAAGTTGTTTGTGTTCATTCTTGTGTATCATGATTATCAGGACAGATTCTAACAAGGAGCACCGTAACCTCTCTGCTGTACATTTCTGCTCATTCATTTATCCGTGAAGCAACTGGTTGTATGGCTGGTGTGAACATTGTCACTTGCTGAGATTTCTGTGGTTGGACCAGCTGTGCAGAGCAGAACAatcaactgaaaaaaataaataaacatgaactgttttaaactgaa

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110304 lncRNA upstream 169539 19990539 ~ 19991729 (+) True G81856
TU110268 lncRNA upstream 212851 19945135 ~ 19948417 (+) True G81830
TU110261 lncRNA upstream 236592 19921069 ~ 19924676 (+) True G81827
TU110252 lncRNA upstream 253170 19901163 ~ 19908098 (+) True G81822
XR_002650343.1 lncRNA upstream 416840 19731185 ~ 19744428 (+) True LOC111193210
TU110372 lncRNA downstream 2745 20177054 ~ 20179530 (+) True G81899
TU110406 lncRNA downstream 11505 20185814 ~ 20187153 (+) True G81913
TU110411 lncRNA downstream 48173 20222482 ~ 20223668 (+) True G81917
TU110414 lncRNA downstream 87290 20261599 ~ 20272723 (+) True G81919
TU110415 lncRNA downstream 126969 20301278 ~ 20301732 (+) True G81920
XM_007252188.3 mRNA upstream 6586 20150418 ~ 20154682 (+) True LOC103037509
XM_022672891.1 mRNA upstream 333063 19800197 ~ 19828205 (+) True LOC103040036
XM_007252195.3 mRNA upstream 393960 19765336 ~ 19767308 (+) True LOC103039716
XM_007252500.3 mRNA upstream 1331311 18810473 ~ 18829957 (+) True LOC103028664
XM_015606682.2 mRNA upstream 1361050 18765653 ~ 18800218 (+) False ktn1
XM_022672912.1 mRNA downstream 10601 20184910 ~ 20199839 (+) True tmem62
XM_007252178.2 mRNA downstream 38800 20213109 ~ 20246310 (+) False elmsan1
XM_007252176.3 mRNA downstream 46021 20220330 ~ 20246310 (+) True elmsan1
XM_022672917.1 mRNA downstream 217061 20391370 ~ 20446806 (+) True mta1
XM_007252559.3 mRNA downstream 273601 20447910 ~ 20464852 (+) True tmem229b
TU110179 other upstream 487630 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 495221 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 1230514 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 1640321 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 1697172 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 2183335 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 3056121 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 3701130 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 3701130 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 3735373 23909682 ~ 23920698 (+) True G82811

Expression Profile