RNA id: XM_015606682.2


Basic Information

Item Value
RNA id XM_015606682.2
length 4694
RNA type mRNA
GC content 0.49
exon number 34
gene id ktn1
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18765653 ~ 18800218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCCCGCCTCTCCGAACCAGCGTAGACTCGCTGCTAACCGCCGGGCCGGAGCCGCTGTCCACCGCGCTCCACAAAGGGAGCAGCTTTCATTACAACAGTAACTCGCTAGCTTTGGTAAAGATATCAGAATGGCGATCGACATAGCTGACTCGCAGTACCTCCTCATCCTTGCACCGTCGCTGGTTATCGCCCTCATGTTCCTCTTCTTCTGGCTCTTCATGAAGGAGACGTCCTACGACGAAGTTCTGGCCCGCCAGAAAAGAGACCTGAAGCTGCCGCCCATTAAGACAGACGCCCGCAAAAAGAGcgagaaaaagaagaacaagaaaaaagagagtgGTGGGAGTGGAGGAGGAGAGTCTGAGGAAGATCTGCGAGACTTTGATGTATCCGATGCCACTACACCGGCCTCAAATGACGAAGAGTCTGAAGTGCCTGTGTCCCCACCTGTGGTCACCCCTGTCCAAGCAGAGCCTCCAGCAGTAGtgagggagaggaagaagaaggagaagaaggcaAAGGCTGCTAACACAGCTGCTTCTTCTCCTCCTGCACATCCTCCTCCTGCCACCTCGGAGGAGCCGGAAGTCAACGGCTCAAAGTCTGCTGCTGGGCGTAAGGAGCACACCCTCCCCCTTAGCAAGCAGCCGAGCCCTCCGCAGCCACAAGCCACACCCCCAGCTTCAACAGAGACAGCGGGCAGAAAAAAAGCCAAGAAGCAGAAGAGTGAAACTGAAGAGCATCCAGCTGAGGTAAAGCCAGACCAGTCTCCTGTTGTGGTAAAGAAGGAAGAGCCTGTTCTGGTTGAGCATAAACAGCAGGATGGAGCTGCCCCTGCAACTGTCTCGCCTGTGGCTGTTCCTACTGCCTCCGCTGGCAGTGGCCGGAGAAAGAGCAAGAAGCAGAAAACGGAGGCAGTTGTCACTGTTGATGAGGCTCATCTCCTGTCTTCTGCTCCTGTGATCCACGCTGACTCTGCCTCTCCAGCAAATCACCAGAGCAGCCAGAATGATGAGGCACCTGCTCCAGCTCACACCTCCACTAAACATGGAAAGAAACAGAAGAACGAAACTGACAAAGAGAATTCAGGGGTGAAGTTGAAAGAGCTGATGGCCAGTCTGGGAGGGCTGGTGTTGTCCGATGCTGATGTTGTGTCTGTGGTCTCAATGCTCCGGGATAAGAGTCCTAATGCCCTGGATACTTGGTATAAGTCTGCAGCGAAGTTTGAACCCTCAGCTCAGCAGCTGGCAGAGAAAGAGCGTCTTCTGAACACTTTGCAGGAAGAGGCCTCCATCGCTAAAGAGAAAGTCAAACAGCTCAGCCAGGAGCTGCAGGCAGAGAAGCAGAAGAGTGGTCGTGCGGAGGCTGTGCTGCGGGAACAGCGGGTTGCTATGGAGAAAGAGATACAAGCCAAAGCCCAGGGCAGCTACCAGGAGCTTCAGGGCATGCAGATGAAGTTTCAGAAACTGAGGGAACAGTTGGAGGGACAAATTTCCAGACTGCAGCAAGAAAATGGCATCCTCAGAGATGCTGTTAGCTCTGCCACCAACCAGATGGAGACCAAGCAATCAGCTGAACTGAACAAACTACGCTCAGAGTATGCAGGTCTGATGAAGGAGCTGGCTGAGACCAATAACAAACTACAGCAAGAGGAGCTTCAAAGGAAGAGCCTGGAGGTTAACTACAAGCAGAATGTGTCCCAGCTAGAGGCACAGTTACAGGATGCTAAGCGTCGCTGGGAGGAACTGCAGAGCTATTTGCACAGTGTTagtactgagagagagaaactacAGACTGCTAAACaagAACTACAGAGTCAGCTGCTGGCAGTGGAAACAGAAATGAGCAATAAGAACAAAGAGATCCAGACCCTCCACAGCAGTCTAACAGACACCATGGTGTCCAAGGAGCAGGTGGAGCAGAAGGTCATGCAGCTGCTAGAGGTTTCTCAGCACAGCTTGCAGCCTGACGACTCTCTGCAGGCTCAAGTGCAGGACCTTTTGAATGAGAACAAAACACTCCAAGTTCAAATTGAGAGTCTTAAGGCTCAGGTCACTTCTCAGGCTAACACAGTTTCTCATTTTGAAGAGCTTCAAAAACTGCTGGCTGAGAAGGAGCTCCAGAGAAAGAGTCTGGAAGATTCTCTCAATGCAGAGAGGAGCAGTGGCGCCAGCAGGGAGACCAACATGCAGGCCATTCACAATGAAAACTTCGCTCTGAAGGCTGAACTACAGAATCTGCAGGCACAGATTTCTGAACAGGCCTCCTCCCAGTTGGCAGTGGATCAGCTCAAGCaaagccttaaagagagagaggagaagttTAAGACAGTGGAGGCACTGCTTGAGGCGGGCCTTATTGAGGTGGCCAATAAGGAAGGGGAACTTAAGacAGTAAGGGAAGAGAGTGAATCTCTGAAGCGGCACGTTGAGGCCTTGCAGCAACAGACGGCAGAGCAGAAGCAGTCTGGCACAACActagaggagctgcagaggcagATTAATGAGAAGAATGAGAAGATTAGATTGGTTGAAGAAAGTTTACAGTCTGCACTGGAGAAAGAATCAGCAAGAGTGAAAGCTATTGAGATTCTGGAGAGACAGCTGGAGACTCTCGCAACTGAACTGTCTGCAGTGAAAAGCAGGGAAACTCAGGAAAACTCTACCGCCAGCTCTCAGCTTCTGGAGTTCCAGACTTTATTAGCTACTAAAGATCAGGAGCTTCAGAGACTGCAGGAGGTCATTGAGAAGATGACCAGAGAAGCAGAAGAGAATATTGAGCAGCAGCAACAGCAGATGGCATCAGTTGTTTCCAGTCAGGAGTTGTTGGCAGCGATGTCAGAAAAGGACAAGCAGCTGTCTAACGTTCAGGCTGAGCTGCAAGAACTGAGGGAGGCAGTGGAGCTTCACAGGAGGAAGAATAATGAGAGCCAGACAGCACTGGAGTCTGCTGAGGCTGAATGTCGAGCAGTATTGCACAGACTCCTCCCACACGTTCCTGTGCCCAACGAACAGAATCATAAGAAGTGGTTGCAGAACTTTGAAAGCTCTGTAAAGGAGACTTCACTGCGAGAATCTGCTGCTCCTGTAGAGGATGGTGATGCCAAGAGTTTGACAGAGAAGTTAAAGGAAGCTGAGGAGGCTCAGAAAGTTCTACAGAAAGACTGTGAAACATACAAGAAAGTTTTAGCTGAGACGGAGGGTATTCTACAGCGACTCCAGAGCAGCGTAGAACAGGAGGAGTGCCGCTGGAAGGAGAAACTGGATCAGGCCCAGAGTGATCTAAGAGAGATGACCCTGAAGGTGACTGTGTTGGAACAGGAAGTGGATAGACAAGGCGCAGATGGAGAAGTGGAGAGTTTGAGAAGAGATAAGGAGCACCTAGAGTCTGAACTGGAGAGAGCAGAGCGTGAGAGCGCCACCTATGTGTCGGAGGTCAGAGAGCTGAAGACGCAGCTGACTGAGACCTTGGGCAAGCTGGAGACGGAAGAAAGTGAACGGCAGAAAGTGGCTGGAGATCTTTACAAGGCCCAGCAGTCTTTGGAGCTAATTCAGGAGGAAATCTTAAAGGAGACTGGCCAGAGTGACCTGATTCAGAACAGTAACCTTACCATGCAAACGgagGAGATTGATCGTAAGGAAAAGATGACTGCAGGGCTAAACCAGACAGTACGAGAACTACAGGAATTACTACAGGCCGTAAACAGACAGCTCACCAAAGGGCAAGAGAGGGACAATGGGGATAAGTAactgaaagaaaaatagaaggtggtgtcagtgtgtcttctaATGGCCAGTCCTATTCTCCACGCCCCAGattaaccctgtcacactctGGCCCCTTCCTGTTTCCCTTCATACCAGATCTGACTCCCCAAACCCACAGCACCTGCAACCTGTTATGTAAGTGGTAGACCATCTCTCCTCCCTTCAAGACCAATCCCTGCTGGGGAGAGAATGGGGAGGGGCTGAAACCTGGCAGTAAATCCACTCCAAGAACCAATCAAACCGGATCCTTTCTCATGATGGTGTCAGCTCCTCTGCAATGGCATTCCACATTTCCTGTAGAGTTTCCAGAGCAAAGGCATCCGAATACACGGTTAAGATGCGTTctgagtttatttaatttttacctGTTTTGAGTCAGAACACTTTTAATACTACTATTTTCTGTTAGCTCATCTTGACAGGAGGGGTTAATTAATCCTTTCGTAAAAATGGCATTTGAggatatttatgttttaaagacTAAGATAACTGTTAGGATCTACTGACACTCACTACATTGTTTCCAGCTTGTGTCCTGCAATGTATGtacattaaacatacaaatgACCAAATACACTCCTTTACACACACTTGagttttctgaatgttctaTGGTATTTGTTTTTCAGAGTATCTATTGTAGGTAAGAGCTGTTATTGACTGAAGCAGATGGTTTAAGTCTGTTCTGTGCTTTCTCACTGCTAGCACTGGAGGTCAATGGCTCTGAGCTATGGTTTCTTCTACTGTAACTACTTCTAAATGAAAGAGGAGGGGAAAAGAGAGGCATCTCAAGTCTaatctatacacacactatgcTGTTGCTAATTTCATTAACAAagacaatttaatttttttgtaaaacaggTGGACCGTTATTAAAAGGGATGCTTAATAAATATCTCAtgtgcttgattttttttaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109962 lncRNA upstream 48454 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA upstream 49756 18714205 ~ 18715897 (+) False G81602
TU109957 lncRNA upstream 59371 18704815 ~ 18706282 (+) True G81600
TU109895 lncRNA upstream 215446 18545469 ~ 18550207 (+) True G81558
TU109866 lncRNA upstream 266775 18475117 ~ 18498878 (+) True G81540
TU110103 lncRNA downstream 65458 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 130938 18931156 ~ 18937144 (+) True G81705
TU110115 lncRNA downstream 141190 18941408 ~ 18941814 (+) True G81708
TU110135 lncRNA downstream 500140 19300358 ~ 19324568 (+) True G81725
TU110136 lncRNA downstream 500140 19300358 ~ 19324211 (+) False G81725
XM_022672872.1 mRNA upstream 1073 18750696 ~ 18764580 (+) False msh4
XM_022672869.1 mRNA upstream 1073 18750697 ~ 18764580 (+) False msh4
XM_022672870.1 mRNA upstream 1074 18750697 ~ 18764579 (+) False msh4
XM_015606677.2 mRNA upstream 1074 18750698 ~ 18764579 (+) True msh4
XM_022672873.1 mRNA upstream 1075 18754655 ~ 18764578 (+) False msh4
XM_007252500.3 mRNA downstream 10255 18810473 ~ 18829957 (+) True LOC103028664
XM_007252195.3 mRNA downstream 965118 19765336 ~ 19767308 (+) True LOC103039716
XM_022672891.1 mRNA downstream 999979 19800197 ~ 19828205 (+) True LOC103040036
XM_007252188.3 mRNA downstream 1350200 20150418 ~ 20154682 (+) True LOC103037509
XM_007252180.3 mRNA downstream 1361050 20161268 ~ 20174309 (+) True LOC103035446
XR_002650340.1 other upstream 244706 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 301557 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 130020 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 865518 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 872909 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3557426 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4430212 23230430 ~ 23231318 (+) True G82609

Expression Profile