RNA id: XM_022672866.1


Basic Information

Item Value
RNA id XM_022672866.1
length 7815
RNA type mRNA
GC content 0.49
exon number 45
gene id eml5
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18634169 ~ 18704075 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATTTGACGACGAGGCGCAAGTGCAGAGCCGCCAGTCGTGGTCCGGTCAGCAGCAGGGGGAGGGCAGCGAGCTAGATAACGTTAAATATACCTTAGTTTACATCTGTGAAAGAAGTATTTAACCTAAAAGGTCGTTAAAACGCGTTGAGACTTGAATAAGCTTCATGTCAGAAAAGCGCGAAGAAAAACccgtgtgtttgtgagagaatGCTAGGCTAACAGCGCCCGAAGTTGAGAAGAGGACTTGGGCTGGAAGTGGATGCCGTTAGGACAGACTTGTGTGTAGCTCCGGACCGAGCGGAGCCAGCGGAGGAGAGGCTGCATGAGGGCTCGCCGTCTTGAatgagaaagcagcagcagcagctcttcgCCTCGGAGAGAAACAAGTGCGAACATGGCTGACAGAACAGCACCGAACTGTCATCTGCGCCTCGAGTGGGTTTACGGCTACCGGGGACACCAGTGCCGCAACAACCTGTACTACACGGCAGCCAAGGAGATAGTGTACTTCGTGGCCGGTGTGGGAGTTGTGTACAACACACGGGAACACAAGCAAAAATTCTACCTGGGTCACAACGACGATATTATCAGTTTAGCCCTGCATCCAGAGCGAGTGTTGGTGGCCACAGGGCAGGTGGGGAAGGAGCCGTATATCTGTGTGTGGGATTCCTACACTGTTCAGACGGTGTCCATTCTGAAGGACACGCACACGCACGGCATCGCCTGTCTTGCCTTCGACCTTGATGGACAGAGTCAGTCTGAATCTCCTCCATCCTCTGACATTTTGAAGCAGACAGCAGGTCTACACTTTAAACCCCTAGCAAACAAGCTGAAGGCAAGCAGCATCCTTTTAGGAGCGACACTTGAGTGTTTGGTATCCGTGGGCCTTGACTCCAAGAACACAATATGTGTATGGGACTGGAGAAGAGGGAAAGTGCTGGCTGCTGCTCCTGGTCATACAGACAGGATATTCGACATATCTTGGGATCTATATCAGCAGAGCAAGCTTGTGAGCTGTGGAGTAAAACATATCAAGTTTTGGAGTCTGTGCGGGAACGCTCTGACCCCTAAGCGTGGCGTGTTTGGGAGGACGGGTGAGCTGCAGACCATCCTCTGCGTGGCCTGTGCTAGAGACGAGGTCACATACTCCGGTGCCTTGAATGGGGATATCTATGTCTGGAAGGGAGTCAACTTGATACGGACCATTCAGGGGGCACACGGGTCGGGGATTTTCAGCATGAATGCATGTGAAGAGGGCTTTGCCACGGGTGGCAGAGATGGCTGCATCCGACTGTGGGACCTGAGCTTCAAACCCATCACTGTCATCGACCTCAGGGAAACAGACCAGGGATATAAAGGACTGTCAGTGCGCAGTGTGTGCTGGAGGGGGGATCACATCCTGGTGGGCACGCAGGACAGTGAGATATTTGAGGTGGTAGTACACGACCGCACAAAGCCCTTTCTCATCATGCAGGGCCACTGTGAGGGAGAGCTCTGGGCCCTTGCCGTCCACCCCACCAAACCTCTCGCCATGACCGGCAGTGATGACCGATCTGTCCGGATCTGGAGCCTTATAGACCATGCATTAATAGCACGCTGTAACATGGAGGAACCCATCCGCTGTGCAGCAGTAAGCACTGATGGCATCCACCTGTCTCTGGGCATGAAAGACGGCTCCTTCACAGTGCTGAGAGTCAGGGACATGACGGAGGTGGTTCACATTAAGGACCGTAAGGAGGCCATCCATGAGCTGAAGTACTCTCCTGACGGGTCTCATCTAGCCGTGGGCTCAAATGATAACTCAGTGGACATCTACAGTGTGGTGCAGCGCTATAAGAAGGTTGGAGAGTGTGTGGGCTCCCTCAGTTTTATCACACACATGGACTGGTCCACTGACAGCAAATACCTACAGACCAATGATGGCAGCGGAAAGAGGCTTTTCTACAGGATGCCCAGTGGGAAGGAGGTGACCAACAGAGAGGAGCTGAAGCTAGTCCAGTGGTCCACGTGGACGTGTGTTCTTGGTCCGGAAGTGAATGGAATCTGGCCCAAATATTCTGACATCAATGACATCAACTCTTTAGATGCTAACTTCAGTAGTCAAGTTTTAGTAACAgctgatgattatggattagtGAAGTTATTACGATATCCATGCATAAGAAAAGGTGCAAAATTCAAAAAATATTTAGGGCACTCTGCACATATAACCAATGTAAGGTGGTCACATGATTATCAGTGGGTAATAAGTATCGGTGGAGCGGATCATTCAGTGTTCCAGTGGAAGTTTGTACCTGAAAGGAAGTCGAAAGAAACTCTCCATATAGCCCCACAAGAGATGTTGGCTGATTCAAACAGCGAGGAGTCTGattctgaccaatcagatgTTCCTGAGATGGACTCTGAGATTGAGCAGGAAACACAGCATACTTACCGACGACaggtttACAAAGAAGATCTACCTCAGCTTAAAGAGCAGTACAAGGAGAAGCATCGAGCTGCAGCTATGAAGAAGAGGGAAAGAGCTCCAGCCAGTGGAGCAAGACTGCACTTTATTCATGGTTACCGAGGCTACGACTGCAGAAGTAACTTGTTCTACACTCAGACCGGAGAGATTGTTTACCACGTGGCAGCAGTGGGAGTGGTATATAACAGACAGCAGAACACACAGCGCTTCTATCTGGGCCACGACGATGACATCCTTTGCTTGGCCATCCACCCCCTCAAGGACTATGTAGCTACAGGCCAAGTGGGACGTGACTCATCCATACACGTCTGGGAAACCGAATTTTTGAAGCCTCTTTCAGTTCTCAAAGGATTTCATCAGTTTGGAGTGTGCACACTTGACTTCTCAGCTGATGGGAAGCGACTGGCCTCTGTGGGTTTGGATGACAATCACACCATTGTTCTCTGGGACTGGAGGAAGGGAGAAAAGCTATCGGCCTTCAGGGGAAGCAAGGACAAGATATTTGTTGTTAAAATCAATCCGTATATGCCTGACAAGCTCATCACTGCTGGAGTAAAGCATATGAAGTTCTGGCATAAAGCAGGAGGAGGTCTAATAGGAAAGAAGGGCAGCATGGGGAAGACTGAGACCATGATGTGTGCAGTGTACGGCTGGACAGAGGAGATGGTGTTCTCTGGGACATGCACAGGAGACATCTGCATTTGGAGGGACATGTTTTTGGTGAAGACGGTCAAAGCCCATGATGGACCAGTCTTCAGTATGCATGCCCTTGAGAAGGGTTTTGTGACTGGTGGAAAAGATGGCATAGTTGCTTTATGGGATGATACTTTTGAGAGGTGCCTGAAGACATATGCCATAAAAAGATCTGTGCTTGCCCCAGGGTCCAAAGGATTATTATTAGAGGACAATCCCTCCATTCGTGCCATATCTCTGGGTCATGGACACATACTTGTAGGAACGAAGAATGGAGAAATTCTGGAGGTGGATAAAAGTGGGCCCATCACTCTGCTGGTACAGGGTCATATGGAGGGGGAAGTGTGGGGTTTGGCCACCCACCCTCACCTGCCACTGTGTGCCACTGTGAGTGATGACAAGACCCTGCGCATCTGGGATTTGTCTCCCAGCCACTGCATGCTCGCTGTACGCAAACTCAAAAAAGGtggccgctgctgctgcttttctccGGATGGCAAGGCTCTGGCTGTGGGGCTGAATGATGGCAGCTTCCTCATCGTTAACGCAGACACTCTAGAGGACCTCGTGTCATTCCACCACCGCAAGGACATCATCTCCGACATCCGTTTCTCTCCAGGTGCTGGAAAGTATTTGGCAGTGGCATCAGGCGACAGCTTTGTGGATATATACAATGTGATGAGCAGCAAGAGGGTGGGCGTTTGCAAAGGCTCCATGAACTACATTACCCATCTAGACTGGGACAAAAGAGGGAAGCTATTGCAGGTCAACACTGCAGCTAAGGAGCAGCTATTTTTTGAGGCCCCTCGTGGGAAGAAGCAAACCATTCCTGCCTCAGAGGTGGAGAAGATTGAGTGGAGCACATGGACATGTGTGCTTGGGACCTCCTGTGAGGGTGTCTGGCCGGTGGTTAGCGAGGTTACCGAGGTAACAGCTGCGTGTCTTAGCAACGACAGGCAAGTGCTGGCAACAGGCGATGACCTTGGATATGTCAAGCTCTTCAGGTATCCTGTTAAGGGAAAGTATGCAAAGTTCAAGCGCTATGTGGCTCACAGCACCCATGTGACCAATGTGCGCTGGACACACGATGACTCTCTGTTGGTGTCAGTTGGTGGGGCTGACACCTCTCTAATGATCTGGAGCCATGAGTCCGAGGGCTGTCGGGAGGTGCGTCAGTGCGACAGTGAAGAGTCCGACATCCAGAGTGAAGATGATGGGGGGTATGATAGTGATGTGACTCGGGAGAATGAGATTAATTATGTAATCAAGGCCTTATCTACCAACATGCGATCCATGACTGGGGTCAAGCCTCACTTACAACAGAAAGAGCCATCAGTAGATGAAAGGCAGGGGGTAGTCAGGGGCTCAAGACCCCCAGTCAGCAGAGCTTTACCAGTGCCAGAGAAACTACAAACCAACAATGTGGGCAAGAAAAAGAGGCCCATAGAGGACCTGGTGCTAGAGCTGGTGTTTGGTTACCGGGGCAACGACTGCCGCAACAACGTGCATTACCTGAATGAGGGGGCGGATATCATCTACCACACAGCTTCAGTCGGGGTCGTCCTCAACTTGACAACAGCATGTCAGAGTTTCTATGTTGAGCACAGTGATGACATTCTGTGCCTCACCATCAATCAACACCCCAAGTTCCCCAACGTGGTGGCAACTGGCCAAGTAGGTGACAGTGGTGATATGTCAGCCACATCCCCGTCCATCCATGTGTGGGATGCCATGAACAAACAGACTCTGTCCGTGCTGCGCTGCTACCACTCTCGGGGCATCTGCTCGGTCAGCTTCAGTGCCACTGGCAAGCTGCTTCTGTCTGTGGGATTGGACCCCGAGCACACCATCACCATCTGGAAGTGGCAGGAAGGTGCCAAAGTAGCCAGTCGCTCCGGCCACACACAACGGATCTTTGTGGCCGAGTTCCGGCCGGACTCAGACACTCAGTTTGTGTCAGTGGGGATAAAGCATGTGCGCTTCTGGACCCTAGCAGGCAGGGCTCTACTCAGCAAGAAAGGAGTGCTCAGCTCTATTGAAGATGCACGCATGCAAACCATGCTCTCTGTGGCATTTGGTGCTaataacttgacatttaCAGGTACCATTAGTggagatgtgtgtgtatggaagGAACACATTCTAGTGCGAATTGTGGCTAAGGCACACACTGGTCCTGTTTTCACCATGTACACCACTCTACGAGATGGGCTCATTGTCACTGGTGGCAAAGAGAGACCGTCTAAGGAGGGCGGTGCATTGAAGCTATGGGACCAGGAGCTGAAGcgctgcagagctttcagattgGAGACCGGCCAGATCATAGACTGTGTGCGCTCTGTCTGCAGAGGCAAGGGTAAGATCTTGGTGGGCACACGAAATGCTGAGATTATTGAGGTGGGCGAGAAGAATGCAGCATGTAACATCTTGGTCAATGGTCACATGGATGGTCCCATCTGGGGTCTAGGTGCTCACCCTACACGAGACGTCTTTCTGTCAGCTGCAGAAGACGGCACAGTGCGGCTGTGGGACATTCCAGAGAGGAAGATGCTGAATAAGGTAAACCTGGGGCATCCTGCACGCACGGTGAGCTACAGTCCTGAGGGTGACATGGTGGCCATTGGCATGAAGAATGGAGAGTTCATCATTCTCCTTGTCACCTCACTCAAAATATGGGGCAAGAAAAGAGATCGCCGCTCCCCCATTCAGGATATCAGGTTCAGTCCAGATTCACGCTATCTTGCTGTGGGCTCAAGTGAGAATGCTGTGGATTTCTATGACCTGACTCTGGGACCGCAACTAAACCGCATTAACTGCTGCAGAGATATTCCAAGCTTTGTTATTCAAATGGACTTCTCTGCTGACAGCTGTTATGTACAGTTGTCCACTGGTGCTTACAAACGGCTCGTTTATGAGGTGCCTTCTGGAAAGCAGGTCACAGAGCAGGCAGTCATAGACAGAATAACCTGGGCCACATGGACAAGTGTGCTGGGGGATGAGGTTGTGGGAATCTGGTCCCGCAATACGGACAAAGCTGATGTAACATGTGCCTGCGTTTCTCACTCCGGCCTCAACATTGTCACGGGTGATGACTTTGGAATGGTAAAGCTGTTCGACTTTCCGTGTCCAGAGAAGTTTGCCAAACACAAGCGCTTTCTAGGCCACTCGGCCCATGTGACCAACATTCGCTTCACCAATGGGGACCGTTTCGTCATCAGTGCTGGAGGTGATGATAGAAGCCTgtttgtgtggaagtgtgtcCATGCACCTCACTGAAGCAGCCTTCGCCTCAGTGCCACTGCAGGGTCCAGAGGAGAGGGTACACTGTCCGGTCCCAGCATGAGCAGCACGAGGAGCCCAGCAGAGCACAGCACTGTGCTGCTGACTGAAGAGAGAAAGCATTAGCGGCTGGTGCTTCTAACCAGGCTGGATTCAATCCTGACTTTTCCACCACCCGGGGCTCCATAACCATGTATCTAAATGAGCCTCCTAGCCTGTCATTTTACCACACCTAAAACCTACTCTACTTCTGTCTTACCTGGCTGTGAATGGTGCTGGTCTGTGAAATGTCTATGATTAGAGAAGGTTTTTACTCTCAGATATGAAGGTGATGCTTTAAATACTTGTATCCCCTCTTCCCTGTTTTTACGACTGTCCTGAGTTTGCAGATGGAATGtcttttaagtttaaaaaatgtctgTGTCAATGTTCCTCAAGGTGTTTAAGACATTCTTCCAATCAAAAGACTTAACAAATGTGTAGCAAGCAAAATATGATTAGCCTTAAAGCACCCACTGAGTGTTCTTCTTCATAGAGGTAGGTCGGACCTCTCTGTTTGAAATGGCCCTTTTTATAGGCTCACTTGtgcttgttttttatgttttgtgtttaatacGCTTTCATATATCTCTTCCACGGTCTGTtgatttttttcacacaaaaaaaaaaaatctgaactcCTGTGGCCTTTTTCCTGAATGTAACAGAGCGTTATATTCTTGGATGTCAGCATGCCAAAGCATTCTATGCACTGTATACTTGACCTCCTCACTGTGGTTCTCCGGTGGTCTTTAATGTCAGCCCTGAACATGGTATTCACTCATCAAACCTCAGACCCCCCCTGCAGAAGTAGATGAAACTCCAAACCTCTTATGTAGCATCTTTAGCTTTAGCAGTAACCGTGAGTTCTgggtgcgagtgtgtgtgcgtttgtgtgtagGTAAGAAGTATATGCTGTGTATTTTGTGTCTGAGAACAAATTTTAAAAGAAGTTCTCATTTCCATTATGTCCCTTAAAAAAATGGAACACGAGGGATAAAAGATGTTGTGATGCACGGTTGCATCAATGAAATCACTATTTATTGTGCTGCTAAAGCCTTTTTTTAAGTCATATCATAATTAAGAAATGTGTTTCTTCCACTAACAGATCTAATGTTATTTAACTGGAATGTTCCAGTCAAGAGGGATACAGAAGTAAATGATGGATATAACATGCAAactgttttctattttatttgttgTCTTACTAATTAATAGTGAGTTGTGTCCAGTGCATATTTTGATTTTCTGATATTAATGTAAATACAAATGTAAAGACAttcttttgtatatttttgtgaaatgttttcttaaaggccaattttgattaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109895 lncRNA upstream 83963 18545469 ~ 18550207 (+) True G81558
TU109865 lncRNA upstream 133459 18447388 ~ 18500711 (+) True G81539
TU109866 lncRNA upstream 135292 18475117 ~ 18498878 (+) True G81540
TU109881 lncRNA upstream 162599 18470407 ~ 18471571 (+) True G81547
TU109863 lncRNA upstream 191459 18441069 ~ 18442711 (+) True G81537
TU109957 lncRNA downstream 740 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 10130 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA downstream 10130 18714205 ~ 18715897 (+) False G81602
TU110103 lncRNA downstream 161601 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 227081 18931156 ~ 18937144 (+) True G81705
XM_007252512.3 mRNA upstream 1615 18580869 ~ 18632555 (+) True LOC103031945
XM_022672860.1 mRNA upstream 1615 18581292 ~ 18632555 (+) False LOC103031945
XM_022672858.1 mRNA upstream 54599 18569530 ~ 18579571 (+) True plk4
XM_022672859.1 mRNA upstream 54912 18568668 ~ 18579258 (+) False plk4
XM_007252514.3 mRNA upstream 66516 18551021 ~ 18567654 (+) True hspa4l
XM_007252508.3 mRNA downstream 4337 18708412 ~ 18712887 (+) True npc2
XM_022672862.1 mRNA downstream 12463 18716538 ~ 18749129 (+) False atg2b
XM_022672861.1 mRNA downstream 16147 18720222 ~ 18749129 (+) True atg2b
XM_022672863.1 mRNA downstream 16147 18720222 ~ 18749129 (+) False atg2b
XM_022672874.1 mRNA downstream 46618 18750693 ~ 18763574 (+) False msh4
XR_002650340.1 other upstream 113223 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 170074 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 226163 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 961661 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 969052 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3653569 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4526355 23230430 ~ 23231318 (+) True G82609

Expression Profile